Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0093 ATGTTACGGGCGAAGCCAATTACCACCTTTTCAAACACTGCTAGATCCTTTCTTTTTAGCGGGTCAAGATGTAATGCACCGGATGGAGCTTCCTGCAGTTGCTCTGAAGATGAGACCTGCTTTTCTGAACGACAAAACTCCAAAAAAGAAGTTCTACTCGCACCCAAGAAGCCACCGTCCAGCTCAATATCCAAAACTCCAGTTCAAAGCAAAACACTGATCTCAAAAAATGGAGCAGCAAAGGTTGAAGTTGTAAGTAGTCCCGAATGTGTAAGTTATGCTGCTACTGGTTGTGTAGATGTAGTAAGCTCATCCTCTCCGGCTATTTCGGACCAGCTTGTTAAGGTGGGGATTGTGGCCGTTAACTTCCTTTCTGACATGGTAAATTATAAGATTCCCAATATTGATGGGAGTGGATTACTAAATTTTTCCGGGAACTTCATGGTGGATCCCACCCGGCCCCTTTCGACTGTTAAATCGTCCCATGTCAAGCACATCAAAAGAGAGGGCTTTTCCAGTGTTCATCATCCTAAACAACAACAATCCGGTGAAGTAGCAGCTGTTCCTAGAAGTAGTACTAATAACTATCATGGCTTCTCAAAGGGTAAAACCGACAAACCGGGTCCCGTTGAAGGGAATAATTATCCGGTTGTGGCTCATAGTAGTAGTAGTGGTGATAGAAGGTCTTTTCCGCAGAGATCAAACCCAAAAGCTCATTCAAACCGTTTTACTCCAAATTTCAGGTCTAATTTGAATTATGCAGATTCGGAGTTCACGTTTATCACTAAAAGTTACAATAAAATCCAAACCAGAATTGTTGATCCAATCAATAGACCGTATCCTACTAATTCAAATGTGGTGGAGACCACTTCTCACATATTAAGACAGCTTAAGTGGGGCCCAGCTGCTGAACAAGCTCTTCATAAGCTCAACTATTCAATGGATGCTTATCAGGCAAACCAAATCCTAAAGCAGCTTGAAGACCACTCGGTTGCTCTTGGGTTCTTCCATTGGCTAAAAAGACAACCTGGGTTTAAACATGATGGGCATACTTACACCACCATGGTTGGAATTCTCGGACGTTCTAAACAGTTTAGTGCTATAAATAGATTGCTTGATCAGATGACTAAAGACGGGTGCAAACCAAATGTCGTGACTTATAACCGTTTGATTCATAGCTATGGCCGAGCTAACTACTTGGAAGAAGCAATCAATTCTTTTGAACAGATGCAAAATTCTGGGTGCAAACCCGACCGTGTTACTTACTGTACACTTATCGACATCCATGCAAAAGCCGGGTTTCTAGACGTTGCTATGGGTATGTATGAGAAAATGCAAGAGGTGGGTCTTACACCAGACACTTTTACTTATAGTGTTATGATCAATTGCCTCGGAAAATCTGGCCATTTGAATGCTGCTCATCGGCTTTTCTGCACTATGATAGATCAAGGCTGTGTTCCGAATTTAGTCACTTATAATATCATGATTGCTTTACATGCAAAAGCTCGGAACTATAACATTGCACTGAAGCTTTATCGTGATATGCAAAAATCAGGTTTTGTTCCCGATAAAGTGACTTATTCTATAGTCATGGAGGTTCTTGGGCATTGTGGTTTTCTTGAAGAAGCGGAAGATTTATTCATCGATATGCAACGGAAGAATTGGGTCCCAGATGAGCCGGTTTACGGGCTTTTGGTCGATTTATGGGGAAAATCCGGAAATGTGGAGAAAGCATGGGGATGGTATCATGCCATGCTCAATTCCGGTTTGCGGCCTAATGTCCCGACTTGTAACTCGTTACTAAGTGCTTTCCTCCGGGTCCACCGTTTATCGGACGCATATAACTTGCTACGGACCATGGTCAATCTAGGGCTAAACCCGAGCCTGCAGACTTACACATTGCTCCTCAGCTGTTGCACGGATGCTTACTCGGTAGACGACATGTGGAGTTGCCGTGAGCTCATGGAGATAACAGGCCACCCGGCCCATACTTTTCTCCTATCCATGCCTTCAGCCGGGCCTGATGGAAAAAATGTGCGGGACCACATGGGTGAGTTCTTGGATTTGATGCATAGTGAGGACAGAGAGAGTAAGAGGGGATTAGTTGATGCTGTAGTGGATTTTCTCCACAAGTCCGGACTCAAAGAGGAAGCCGGCTCAGTTTGGGAAGCTGCAGCCCACAAGAATGTGTATCCAGAAGCTGTCAAGGAGAAAAGCTCATGTTATTGGCTTATCAACTTGCATGTTATGTCGGATGGGACAGCCATAACTGCCCTGTCCCGAACGCTCGCATGGTTCCGGGAACGGATGTTGGTCTCTGGTGTGGGGCCTAGCCGGATTGATATTGTGACAGGGTGGGGTCGAAGAAGCAGGGTGACAGGTTCTTCTATGGTGAGGCAGTCAATTGAGGAATTGTTACGCGCCTTTCGGTTTCCATTTTTCACAGAGAAAGGGAATTCAGGCTGCTTTGTCGGGTGTGGAGAACCACTTAATGCATGGTTGATGCAGTCTCATGTTGAGCGAATGCATCTACTATGA 2538 44.64 MLRAKPITTFSNTARSFLFSGSRCNAPDGASCSCSEDETCFSERQNSKKEVLLAPKKPPSSSISKTPVQSKTLISKNGAAKVEVVSSPECVSYAATGCVDVVSSSSPAISDQLVKVGIVAVNFLSDMVNYKIPNIDGSGLLNFSGNFMVDPTRPLSTVKSSHVKHIKREGFSSVHHPKQQQSGEVAAVPRSSTNNYHGFSKGKTDKPGPVEGNNYPVVAHSSSSGDRRSFPQRSNPKAHSNRFTPNFRSNLNYADSEFTFITKSYNKIQTRIVDPINRPYPTNSNVVETTSHILRQLKWGPAAEQALHKLNYSMDAYQANQILKQLEDHSVALGFFHWLKRQPGFKHDGHTYTTMVGILGRSKQFSAINRLLDQMTKDGCKPNVVTYNRLIHSYGRANYLEEAINSFEQMQNSGCKPDRVTYCTLIDIHAKAGFLDVAMGMYEKMQEVGLTPDTFTYSVMINCLGKSGHLNAAHRLFCTMIDQGCVPNLVTYNIMIALHAKARNYNIALKLYRDMQKSGFVPDKVTYSIVMEVLGHCGFLEEAEDLFIDMQRKNWVPDEPVYGLLVDLWGKSGNVEKAWGWYHAMLNSGLRPNVPTCNSLLSAFLRVHRLSDAYNLLRTMVNLGLNPSLQTYTLLLSCCTDAYSVDDMWSCRELMEITGHPAHTFLLSMPSAGPDGKNVRDHMGEFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEAAAHKNVYPEAVKEKSSCYWLINLHVMSDGTAITALSRTLAWFRERMLVSGVGPSRIDIVTGWGRRSRVTGSSMVRQSIEELLRAFRFPFFTEKGNSGCFVGCGEPLNAWLMQSHVERMHLL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 571071 574644 + Conep13aG0009800.1 Cone13ag0093 450480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Cone13ag0093 845 Gene3D Tetratricopeptide repeat domain 438 583 IPR011990 GO:0005515(InterPro)
Cone13ag0093 845 Pfam PPR repeat 351 380 IPR002885 -
Cone13ag0093 845 Pfam PPR repeat 561 590 IPR002885 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Cone13ag0093 845 MobiDBLite consensus disorder prediction 175 200 - -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 385 418 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 420 454 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 525 559 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 596 628 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 350 384 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 561 594 IPR002885 -
Cone13ag0093 845 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Cone13ag0093 845 MobiDBLite consensus disorder prediction 216 244 - -
Cone13ag0093 845 PANTHER OS03G0856100 PROTEIN 92 838 - -
Cone13ag0093 845 Pfam PPR repeat family 382 430 IPR002885 -
Cone13ag0093 845 Pfam PPR repeat family 592 639 IPR002885 -
Cone13ag0093 845 Pfam PPR repeat family 487 534 IPR002885 -
Cone13ag0093 845 MobiDBLite consensus disorder prediction 169 244 - -
Cone13ag0093 845 Gene3D - 720 824 IPR036063 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Cone13ag0093 845 Gene3D Tetratricopeptide repeat domain 297 434 IPR011990 GO:0005515(InterPro)
Cone13ag0093 845 Gene3D Tetratricopeptide repeat domain 584 658 IPR011990 GO:0005515(InterPro)
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Cone13ag0093 845 ProSiteProfiles Smr domain profile. 745 826 IPR002625 -
Cone13ag0093 845 SMART SMR_2 742 828 IPR002625 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Cone13ag0093 845 SUPERFAMILY SMR domain-like 743 823 IPR036063 -
Cone13ag0093 845 Pfam PPR repeat 449 480 IPR002885 -
Cone13ag0093 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0093 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0093 Cone-Chr13:571071 Cone16ag0141 Cone-Chr16:803408 3.42E-140 wgd
Cone13ag0093 Cone-Chr13:571071 Cone19ag0096 Cone-Chr19:543865 1.06E-65 wgd
Cone13ag0093 Cone-Chr13:571071 Cone2ag0866 Cone-Chr2:34620480 8.97E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33