Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0099 ATGGATCCTCCACTCGTAAATGAATCGTCCTTCTCTGCTGCGAATCCATCTGCGTACAGCTTAGCTGAAATTTGGCCCTTCGAAGGGGAATCAATCGGAGCTGCTGCTGCTGCATTGGGGCTCCGGATGAGTTATTTCGGTCAAAGTCTTGGTGGATTTGGTGATAACTCAGCGAATCGTGACAGTTCGTTGGAGGAATCGACGGTGACTGAACAAAGTGGCGCTGCAGGCGGTGGTGGTGGAAGGAAGAGGAAGGATTTCAGCTCTGAGGATGAGTCTTCCAAACTAGTTTCGATTAGTAGGGCCAATTACTTGAATGAATCGAATGGTAAACGGGTGAAATCAGGAGAATCGAGAGATGAAAAGAGTGAACTGAGAGCTGAAGTGGAAGCTAGTTCTGGAGATGGTTATGGTAATAAGGCAGCTGATCAAAGCACCAAAAAAGCTTCCGAGCCACCTAAAGATTATATTCACGTAAGAGCAAGAAGAGGCCAAGCTACTGACAGTCACAGTCTAGCTGAAAGAGCTAGGAGGGAGAAGATTAGTGAGAGGATGAAAATCCTCCAAGACTTGGTCCCGGGATGTAATAAGGTTATTGGAAAAGCACTTGTCCTTGACGAGATAATCAATTATATCCAATCGCTGCAACATCAGGTTGAGTTCTTCTCAATGAAGCTTGAAACAGTTAATTCGAGGATGAACATCGGCCCCTGCATTGAAGCATACACTCCAAAGGATATTGATACACAGCCATTTGATACTGCAACGATTTTATATGGTTCACAAACACCGAGGCAATATCCTGAAGGCGGCTCTCATCCCGAATGGCTTCATATGCAGATTGGGGGTGGGTTCAAAAGAGCGACTTCAGAACTCTTGGGCATCAATGATCAAGTTGGATGA 903 45.63 MDPPLVNESSFSAANPSAYSLAEIWPFEGESIGAAAAALGLRMSYFGQSLGGFGDNSANRDSSLEESTVTEQSGAAGGGGGRKRKDFSSEDESSKLVSISRANYLNESNGKRVKSGESRDEKSELRAEVEASSGDGYGNKAADQSTKKASEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFFSMKLETVNSRMNIGPCIEAYTPKDIDTQPFDTATILYGSQTPRQYPEGGSHPEWLHMQIGGGFKRATSELLGINDQVG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 612715 615351 + Conep13aG0010400.1 Cone13ag0099 450486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0099 300 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 65 235 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone13ag0099 300 MobiDBLite consensus disorder prediction 52 155 - -
Cone13ag0099 300 SMART finulus 171 221 IPR011598 GO:0046983(InterPro)
Cone13ag0099 300 Gene3D - 162 235 IPR036638 GO:0046983(InterPro)
Cone13ag0099 300 CDD bHLH_AtBPE_like 155 237 - -
Cone13ag0099 300 MobiDBLite consensus disorder prediction 52 74 - -
Cone13ag0099 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983(InterPro)
Cone13ag0099 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 234 IPR036638 GO:0046983(InterPro)
Cone13ag0099 300 FunFam Basic helix-loop-helix transcription factor 162 234 - -
Cone13ag0099 300 MobiDBLite consensus disorder prediction 112 129 - -
Cone13ag0099 300 MobiDBLite consensus disorder prediction 93 111 - -
Cone13ag0099 300 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0099 Cone-Chr13:612715 Cone18ag0913 Cone-Chr18:6505353 1.08E-42 dispersed
Cone13ag0099 Cone-Chr13:612715 Cone13ag0995 Cone-Chr13:8388473 1.08E-62 wgd
Cone13ag0099 Cone-Chr13:612715 Cone19ag0102 Cone-Chr19:583082 8.40E-129 wgd
Cone13ag0099 Cone-Chr13:612715 Cone19ag0986 Cone-Chr19:7438204 2.81E-83 wgd
Cone13ag0099 Cone-Chr13:612715 Cone2ag0572 Cone-Chr2:3296185 4.28E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44567 PF03134 TB2_DP1_HVA22 1.20E-25 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0099 - - - 0.0