Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0100 ATGATCTATGATCTTCCACAATATTGTATTCCAGAAACAAATATTTGTCCAAAAAACAAAAAAACGAAAAGAAGAGTTGTAAACATCACCATGCCCATTCCGTCAAGTCTACTTTGCATCATTCTAGTAGTTCATCTAGTTTTAGCTGACCCTGATCCATTACAAGACTTCTGTATTGGAGACCTAAACTCTTCTCACTCTACTATCCATCTCAATGGCTTTCCATGCAAACCAATATCCGAAGTAACCTCAAATGACTTCTTCTTTGAAGGACTCAGCAGAGAAGGCAGCACAACAAACCTTTTCGGTTGGAAAGCCACACCGGCCAATGTTCTTTCATTTCCGGGCCTAAACACGCTTGGGCTGTCCATGAACCGGGTTGATTTTGCCCCAGGGGGGTTGAACCCACCTCACTCCCACCCTCGGGCATCTGAGACTGGGGTCGTTATTCAAGGGAAACTCCTTGTCGGGTTTGTAACGACGGGAAATGTTTATCACTCTAAGGTTTTGAGTCAAGGGGGCATGTTTGTGATTCCTAGAGGACTTGTTCATTTTCAGATGAATGTTGGAGAAGGCAAAGCTCTTTTGTTCACTGCTTTTAACAGTCAATTGCCGGGGAGTGTTGTTGTGCCCACTACTCTTTTTGGTTCCAAACCCTCGATTCCTAACGAGGTTTTGACTAAAACTTTTCGGATTGGAGATGAAGTCATCAATAACATTAAATCCAAGTTTGGTTCTTAA 741 42.65 MIYDLPQYCIPETNICPKNKKTKRRVVNITMPIPSSLLCIILVVHLVLADPDPLQDFCIGDLNSSHSTIHLNGFPCKPISEVTSNDFFFEGLSREGSTTNLFGWKATPANVLSFPGLNTLGLSMNRVDFAPGGLNPPHSHPRASETGVVIQGKLLVGFVTTGNVYHSKVLSQGGMFVIPRGLVHFQMNVGEGKALLFTAFNSQLPGSVVVPTTLFGSKPSIPNEVLTKTFRIGDEVINNIKSKFGS 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 617175 618276 - Conep13aG0010500.1 Cone13ag0100 450487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0100 246 Gene3D Jelly Rolls 49 246 IPR014710 -
Cone13ag0100 246 FunFam germin-like protein subfamily 2 member 1 49 246 - -
Cone13ag0100 246 SMART Cupin_1_3 90 238 IPR006045 -
Cone13ag0100 246 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 47 244 - GO:0005618(PANTHER)
Cone13ag0100 246 PRINTS Germin signature 201 216 IPR001929 GO:0030145(InterPro)
Cone13ag0100 246 PRINTS Germin signature 168 188 IPR001929 GO:0030145(InterPro)
Cone13ag0100 246 PRINTS Germin signature 138 158 IPR001929 GO:0030145(InterPro)
Cone13ag0100 246 CDD cupin_OxOx 50 244 IPR001929 GO:0030145(InterPro)
Cone13ag0100 246 Pfam Cupin 92 236 IPR006045 -
Cone13ag0100 246 SUPERFAMILY RmlC-like cupins 50 243 IPR011051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0100 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0100 Cone-Chr13:617175 Cone19ag0104 Cone-Chr19:589926 4.30E-144 dispersed
Cone13ag0242 Cone-Chr13:1614890 Cone13ag0100 Cone-Chr13:617175 8.42E-22 transposed
Cone13ag0100 Cone-Chr13:617175 Cone19ag0103 Cone-Chr19:586357 7.81E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41