Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0110 ATGCTTGCTGATTCGATCACCAACGTCTCCATTCCTTCTGTTCCAACTGCTAACGCCAGGGATTTGGGCAAGAAGAAGAGGGCCAGGATTGCGAAATTGAAACAGTCCAAGCTCGATGTTCGTCGTGAGCAATGGCTTTCTCAAGGTGCGGTGAAGAACAAGGGATGCAAGGAGGAAATGAATAGCACTTGTACAGTGCCAGTTCCAACGCGCAAAGAGGATGATCGTTCATTGGAGAAACTAGAGATGAGACAGAGAAGGGAAGAGAATAACGGATCAAGCCATGGTGATAGTGATTTTTCCGAGTCACTATCAAACAGTCCTAATAGTGTGATTAGTGGTATCTTGGGTGGTAATGATTCTGGCCCACTTTCTAGTGGGAGTAGCAGTGCTAGTGGCTGTGGTGGGTCTTACTCTGGGAGTATAACAGAAGAAGAAGGAGATGGGGATGATGGATGCTTGGATGACTGGGAGGTTTTTGCAGATGCTCTAGCCGCCAATGACAAGGAGAAAACCTCATGCTCTCAAATGCAACCTGAAAGTGAATTGGTTTCCCAATTGATCCCACCATGTGACACAAGAACTGAAGATTCAAAATTGGATAGTGCAAGAATGGTTCAAGGCTCTTTTGGAAATAAAAGGGCATGGAGCCCTGATGATTCTCTTCGTCCTCAAAGTTTACCCAATTTATCTAAGCAGTTCAGTCTACCAAATCCGGATCGACGTTTTAATAGTTGTGGCGTGCCATGGGCTCGTGGCAGTGTCATATCTGCCCAAGCCACCGCTTGTCCGATTTGCTATGAGGACTTGGATATGACCGACTCAAGTTTTCTACCTTGCTTGTGTGGATTCCACATCTGCCTTTTCTGCCACAACAGGATTCTTGAAGAAGATGGGCGCTGTCCTGGCTGTAGAAAGCCCTATGTGCATGATCCTGTAGACAGTGAAACAAGTGTGCGTGGAGGCAGCTTGACATTGCGGTTAGCTCGTTCTTGTAGCATGGCGACAAGGTCTTAG 1017 46.8 MLADSITNVSIPSVPTANARDLGKKKRARIAKLKQSKLDVRREQWLSQGAVKNKGCKEEMNSTCTVPVPTRKEDDRSLEKLEMRQRREENNGSSHGDSDFSESLSNSPNSVISGILGGNDSGPLSSGSSSASGCGGSYSGSITEEEGDGDDGCLDDWEVFADALAANDKEKTSCSQMQPESELVSQLIPPCDTRTEDSKLDSARMVQGSFGNKRAWSPDDSLRPQSLPNLSKQFSLPNPDRRFNSCGVPWARGSVISAQATACPICYEDLDMTDSSFLPCLCGFHICLFCHNRILEEDGRCPGCRKPYVHDPVDSETSVRGGSLTLRLARSCSMATRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 674172 675875 + Conep13aG0011500.1 Cone13ag0110 450497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0110 338 MobiDBLite consensus disorder prediction 56 154 - -
Cone13ag0110 338 Pfam RING/Ubox like zinc-binding domain 263 308 - -
Cone13ag0110 338 Coils Coil 71 91 - -
Cone13ag0110 338 CDD mRING-HC-C4C4_CNOT4 263 306 IPR039515 -
Cone13ag0110 338 MobiDBLite consensus disorder prediction 1 15 - -
Cone13ag0110 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 320 IPR013083 -
Cone13ag0110 338 MobiDBLite consensus disorder prediction 69 95 - -
Cone13ag0110 338 ProSiteProfiles Zinc finger RING-type profile. 263 305 IPR001841 -
Cone13ag0110 338 SUPERFAMILY RING/U-box 259 313 - -
Cone13ag0110 338 MobiDBLite consensus disorder prediction 96 139 - -
Cone13ag0110 338 FunFam RING/U-box superfamily protein 256 321 - -
Cone13ag0110 338 MobiDBLite consensus disorder prediction 1 25 - -
Cone13ag0110 338 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 261 316 IPR039780 GO:0004842(InterPro)|GO:0004842(PANTHER)|GO:0016567(PANTHER)|GO:0030014(InterPro)|GO:0030014(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0110 Cone-Chr13:674172 Cone19ag0115 Cone-Chr19:650603 4.69E-217 dispersed
Cone13ag0109 Cone-Chr13:670456 Cone13ag0110 Cone-Chr13:674172 4.12E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g676 Blo04g00751 . Bda06g00572 . Bpe12g00575 . . Bma12g01021 . . Cma10g00156 . Car10g00147 Car11g00118 Sed08g0176 . Cpe04g01533 Bhi02g00382 Tan09g2191 Cmetu02g0486 . Hepe09g0162 . . Cla06g01630 Cam06g1812 Cec06g1862 Cco06g1867 Clacu06g1771 Cmu06g1713 Cre06g2532 . . Cone13ag0110 Cone19ag0114 . . . . Blo13g00040 . . Bda14g00830 Bpe07g00814 Bpe15g00621 Bma03g00804 Bma08g00187 . Cmo10g00168 Cmo11g00125 . . . . . Cpe18g00821 . . . . . . . . . . . . . . Lsi06g01512 Csa01g00188 Chy02g02545 Cme02g01929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004379 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 43