Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0113 | ATGGCGACTGTCGGCGAGGTTTTCCAGCGGCGTGTGGCGGAGCAAGTTGGTCGGAGTTCAGCTGAGCTTCATGTTCTTGCTGTTGATGATAGCCACGTAGATCGGAAGGTCATTGAGAGATTGCTTAAGATCTCTTCCTGCAAAGTTACGGCTGTAGAGAGTGGAACAAGAGCTCTGCAGTATCTGGGTTTGGATGGAGAGAAGACCTCTGCTGGGTTTAATGATTTGAAGGTGAATCTGATAATGACAGACTATTCTATGCCTGGTATGACTGGATATGAACTCCTCAAGAAGATCAAGCAGGAATCATCTGCTTTCCGGGAGATTCCGGTCGTTGTGATGTCATCCGAGAATATTCTCACCCGAATAGATAGATGTTTGGAGGAAGGAGCAGAGGAGTTCATTGTAAAGCCCGTAAAACTCTCCGACGTAGAACGGCTGCGAGATTGCATCATGGGAGAAACTACCGAGAAAAGCACTAGCACTAGTACTACTACTAGTATTAGTTCAAAGAGGAAGGAGGAGGAGAAGACAATTAAAGAAGAGGAGGATACTATGGTAAAATTACCTTCACTTCCGACTTCACCATCGACAATTTCTCGATCATCCCGGAAAACACCATCTCCATTGATTTCAGCATTACAACTAACATTGCCTCCTACTTTAAGTCCAAAGAAACCTAGATTGCATAATGGAGCCTAA | 702 | 44.87 | MATVGEVFQRRVAEQVGRSSAELHVLAVDDSHVDRKVIERLLKISSCKVTAVESGTRALQYLGLDGEKTSAGFNDLKVNLIMTDYSMPGMTGYELLKKIKQESSAFREIPVVVMSSENILTRIDRCLEEGAEEFIVKPVKLSDVERLRDCIMGETTEKSTSTSTTTSISSKRKEEEKTIKEEEDTMVKLPSLPTSPSTISRSSRKTPSPLISALQLTLPPTLSPKKPRLHNGA | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 685989 | 687620 | - | Conep13aG0011800.1 | Cone13ag0113 | 450500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0113 | 233 | Gene3D | - | 23 | 205 | - | - | |
Cone13ag0113 | 233 | Pfam | Response regulator receiver domain | 25 | 144 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0113 | 233 | ProSiteProfiles | Response regulatory domain profile. | 24 | 152 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0113 | 233 | CDD | REC_typeA_ARR | 25 | 147 | - | - | |
Cone13ag0113 | 233 | MobiDBLite | consensus disorder prediction | 169 | 187 | - | - | |
Cone13ag0113 | 233 | SUPERFAMILY | CheY-like | 23 | 146 | IPR011006 | - | |
Cone13ag0113 | 233 | MobiDBLite | consensus disorder prediction | 155 | 233 | - | - | |
Cone13ag0113 | 233 | SMART | REC_2 | 23 | 151 | IPR001789 | GO:0000160(InterPro) | |
Cone13ag0113 | 233 | MobiDBLite | consensus disorder prediction | 190 | 219 | - | - | |
Cone13ag0113 | 233 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 20 | 202 | IPR045279 | GO:0009736(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0113 | Cone-Chr13:685989 | Cone13ag0617 | Cone-Chr13:6253790 | 3.08E-50 | dispersed | |
Cone12ag0621 | Cone-Chr12:5585406 | Cone13ag0113 | Cone-Chr13:685989 | 1.41E-62 | wgd | |
Cone13ag0113 | Cone-Chr13:685989 | Cone19ag0116 | Cone-Chr19:655317 | 1.84E-109 | wgd | |
Cone13ag0113 | Cone-Chr13:685989 | Cone8ag0639 | Cone-Chr8:6286505 | 1.27E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44569 | PF00854 | PTR2 | 1.10E-96 | CL0015 | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0113 | K14492 | - | rcu:8258131 | 243.047 |