Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0113 ATGGCGACTGTCGGCGAGGTTTTCCAGCGGCGTGTGGCGGAGCAAGTTGGTCGGAGTTCAGCTGAGCTTCATGTTCTTGCTGTTGATGATAGCCACGTAGATCGGAAGGTCATTGAGAGATTGCTTAAGATCTCTTCCTGCAAAGTTACGGCTGTAGAGAGTGGAACAAGAGCTCTGCAGTATCTGGGTTTGGATGGAGAGAAGACCTCTGCTGGGTTTAATGATTTGAAGGTGAATCTGATAATGACAGACTATTCTATGCCTGGTATGACTGGATATGAACTCCTCAAGAAGATCAAGCAGGAATCATCTGCTTTCCGGGAGATTCCGGTCGTTGTGATGTCATCCGAGAATATTCTCACCCGAATAGATAGATGTTTGGAGGAAGGAGCAGAGGAGTTCATTGTAAAGCCCGTAAAACTCTCCGACGTAGAACGGCTGCGAGATTGCATCATGGGAGAAACTACCGAGAAAAGCACTAGCACTAGTACTACTACTAGTATTAGTTCAAAGAGGAAGGAGGAGGAGAAGACAATTAAAGAAGAGGAGGATACTATGGTAAAATTACCTTCACTTCCGACTTCACCATCGACAATTTCTCGATCATCCCGGAAAACACCATCTCCATTGATTTCAGCATTACAACTAACATTGCCTCCTACTTTAAGTCCAAAGAAACCTAGATTGCATAATGGAGCCTAA 702 44.87 MATVGEVFQRRVAEQVGRSSAELHVLAVDDSHVDRKVIERLLKISSCKVTAVESGTRALQYLGLDGEKTSAGFNDLKVNLIMTDYSMPGMTGYELLKKIKQESSAFREIPVVVMSSENILTRIDRCLEEGAEEFIVKPVKLSDVERLRDCIMGETTEKSTSTSTTTSISSKRKEEEKTIKEEEDTMVKLPSLPTSPSTISRSSRKTPSPLISALQLTLPPTLSPKKPRLHNGA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 685989 687620 - Conep13aG0011800.1 Cone13ag0113 450500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0113 233 Gene3D - 23 205 - -
Cone13ag0113 233 Pfam Response regulator receiver domain 25 144 IPR001789 GO:0000160(InterPro)
Cone13ag0113 233 ProSiteProfiles Response regulatory domain profile. 24 152 IPR001789 GO:0000160(InterPro)
Cone13ag0113 233 CDD REC_typeA_ARR 25 147 - -
Cone13ag0113 233 MobiDBLite consensus disorder prediction 169 187 - -
Cone13ag0113 233 SUPERFAMILY CheY-like 23 146 IPR011006 -
Cone13ag0113 233 MobiDBLite consensus disorder prediction 155 233 - -
Cone13ag0113 233 SMART REC_2 23 151 IPR001789 GO:0000160(InterPro)
Cone13ag0113 233 MobiDBLite consensus disorder prediction 190 219 - -
Cone13ag0113 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 202 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0113 Cone-Chr13:685989 Cone13ag0617 Cone-Chr13:6253790 3.08E-50 dispersed
Cone12ag0621 Cone-Chr12:5585406 Cone13ag0113 Cone-Chr13:685989 1.41E-62 wgd
Cone13ag0113 Cone-Chr13:685989 Cone19ag0116 Cone-Chr19:655317 1.84E-109 wgd
Cone13ag0113 Cone-Chr13:685989 Cone8ag0639 Cone-Chr8:6286505 1.27E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44569 PF00854 PTR2 1.10E-96 CL0015 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0113 K14492 - rcu:8258131 243.047