Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0116 ATGCTCATGATGACTTCGCCTTCAGCTTTGCAGGATTCTTCTTCTTCCAGAGATCTCACTTACAGCAGAAAGCAGAAGTCTCTCGGTCTGCTTTGCTCCAATTTTTTGAGCCTGTACGACCGCGACGATGTCAATTTGATTGGCCTTGACGATGCTGCGTCAAAATTAGGCGTTGAGAGGCGGCGGATCTACGATATTGTTAATGTCCTTGAAAGTATCGGGGTTCTTGCGAGGAAGGCAAAGAATCAGTACTGTTGGAGAGGATTCGCAGCAATACCAGCAGCTTTACAGAAGCTCAAAGAAGATGGTTTGAGGGAGAATTACTACGCCTTTAATAGCAACGATTGTTCAAAAATATCAAATGATGAGGATGATGATGAATGTTCTTCCAATCCCACAGTCGGAAGTCAGAATTCCAATTCCCAATCTTCAGCACCATCTAAAACCGAAAACAAACGGGAAAAGTCTCTGGCTCTTCTAACACAGAATTTCGTCAAGCTCTTTGTCTGCTCTAATATGGACATGATATCTCTTGACGATGCTGCGAAGTTACTACTAGGCAGTGCCCGAAATGCAGCATTAATGAGAACAAAAGTAAGACGGCTTTATGATATTGCGAATGTGCTGTCCTCTATGGGCCTAATCGAAAAGACTCAATCAGCAGATACAAGAAAGCCTGTGTTTAGGTGGCTCGGATTAATTGGTAAACCTAAGATCAAATCTACAAACAATTCAGTTTCAGTTCCTCAAGAGTCCAGGAAAAGGACATTTGGATCAGATGTCACAAACATCAGTATAAGGAGGAATAAGATGGAAAAGAAAACGCAGCTCAATATTCAGACACAAATTAAGGTGGAGACTACGGAAGATGAAGTTGAAAGAAGCAATACAGAGGACTATAGACAGGGTCTAAACAGCTACCAGTTTGGACCCTTTGCTCCAGTCACTGTAGCTAAAGTAGATGTACCTGAAAATAACCATGGCATGGTAGCTCATGATTGGGAGAACCTTGCCTCAACTTACCGTCCTCAGTATCAGAGTCGAGCATTAAGAGAGCTTTTCTCCCACTACATGGAAGCATGGAAATCATGGTACTCAGAAGTTGTGAAGAAGCCTATTTCAATTTCATAA 1131 42.26 MLMMTSPSALQDSSSSRDLTYSRKQKSLGLLCSNFLSLYDRDDVNLIGLDDAASKLGVERRRIYDIVNVLESIGVLARKAKNQYCWRGFAAIPAALQKLKEDGLRENYYAFNSNDCSKISNDEDDDECSSNPTVGSQNSNSQSSAPSKTENKREKSLALLTQNFVKLFVCSNMDMISLDDAAKLLLGSARNAALMRTKVRRLYDIANVLSSMGLIEKTQSADTRKPVFRWLGLIGKPKIKSTNNSVSVPQESRKRTFGSDVTNISIRRNKMEKKTQLNIQTQIKVETTEDEVERSNTEDYRQGLNSYQFGPFAPVTVAKVDVPENNHGMVAHDWENLASTYRPQYQSRALRELFSHYMEAWKSWYSEVVKKPISIS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 694206 696626 + Conep13aG0012100.1 Cone13ag0116 450503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0116 376 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 Gene3D - 146 234 IPR036388 -
Cone13ag0116 376 Gene3D - 18 90 IPR036388 -
Cone13ag0116 376 SUPERFAMILY Winged helix DNA-binding domain 154 233 IPR036390 -
Cone13ag0116 376 FunFam E2F transcription factor-like E2FE 147 234 - -
Cone13ag0116 376 FunFam E2F transcription factor 8 18 90 - -
Cone13ag0116 376 MobiDBLite consensus disorder prediction 130 147 - -
Cone13ag0116 376 MobiDBLite consensus disorder prediction 121 152 - -
Cone13ag0116 376 Pfam E2F/DP family winged-helix DNA-binding domain 153 232 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 PANTHER TRANSCRIPTION FACTOR E2F 14 347 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone13ag0116 376 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0135 Cone-Chr10:701793 Cone13ag0116 Cone-Chr13:694206 1.30E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone5ag1327 Cone-Chr5:7825728 7.70E-10 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone16ag0130 Cone-Chr16:738356 1.45E-139 wgd
Cone13ag0116 Cone-Chr13:694206 Cone19ag0118 Cone-Chr19:663153 8.36E-242 wgd
Cone13ag0116 Cone-Chr13:694206 Cone2ag0880 Cone-Chr2:34706175 3.17E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44570 PF00069 Pkinase 2.80E-47 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0116 K09391 - csv:101219210 455.677