Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0116 ATGCTCATGATGACTTCGCCTTCAGCTTTGCAGGATTCTTCTTCTTCCAGAGATCTCACTTACAGCAGAAAGCAGAAGTCTCTCGGTCTGCTTTGCTCCAATTTTTTGAGCCTGTACGACCGCGACGATGTCAATTTGATTGGCCTTGACGATGCTGCGTCAAAATTAGGCGTTGAGAGGCGGCGGATCTACGATATTGTTAATGTCCTTGAAAGTATCGGGGTTCTTGCGAGGAAGGCAAAGAATCAGTACTGTTGGAGAGGATTCGCAGCAATACCAGCAGCTTTACAGAAGCTCAAAGAAGATGGTTTGAGGGAGAATTACTACGCCTTTAATAGCAACGATTGTTCAAAAATATCAAATGATGAGGATGATGATGAATGTTCTTCCAATCCCACAGTCGGAAGTCAGAATTCCAATTCCCAATCTTCAGCACCATCTAAAACCGAAAACAAACGGGAAAAGTCTCTGGCTCTTCTAACACAGAATTTCGTCAAGCTCTTTGTCTGCTCTAATATGGACATGATATCTCTTGACGATGCTGCGAAGTTACTACTAGGCAGTGCCCGAAATGCAGCATTAATGAGAACAAAAGTAAGACGGCTTTATGATATTGCGAATGTGCTGTCCTCTATGGGCCTAATCGAAAAGACTCAATCAGCAGATACAAGAAAGCCTGTGTTTAGGTGGCTCGGATTAATTGGTAAACCTAAGATCAAATCTACAAACAATTCAGTTTCAGTTCCTCAAGAGTCCAGGAAAAGGACATTTGGATCAGATGTCACAAACATCAGTATAAGGAGGAATAAGATGGAAAAGAAAACGCAGCTCAATATTCAGACACAAATTAAGGTGGAGACTACGGAAGATGAAGTTGAAAGAAGCAATACAGAGGACTATAGACAGGGTCTAAACAGCTACCAGTTTGGACCCTTTGCTCCAGTCACTGTAGCTAAAGTAGATGTACCTGAAAATAACCATGGCATGGTAGCTCATGATTGGGAGAACCTTGCCTCAACTTACCGTCCTCAGTATCAGAGTCGAGCATTAAGAGAGCTTTTCTCCCACTACATGGAAGCATGGAAATCATGGTACTCAGAAGTTGTGAAGAAGCCTATTTCAATTTCATAA 1131 42.26 MLMMTSPSALQDSSSSRDLTYSRKQKSLGLLCSNFLSLYDRDDVNLIGLDDAASKLGVERRRIYDIVNVLESIGVLARKAKNQYCWRGFAAIPAALQKLKEDGLRENYYAFNSNDCSKISNDEDDDECSSNPTVGSQNSNSQSSAPSKTENKREKSLALLTQNFVKLFVCSNMDMISLDDAAKLLLGSARNAALMRTKVRRLYDIANVLSSMGLIEKTQSADTRKPVFRWLGLIGKPKIKSTNNSVSVPQESRKRTFGSDVTNISIRRNKMEKKTQLNIQTQIKVETTEDEVERSNTEDYRQGLNSYQFGPFAPVTVAKVDVPENNHGMVAHDWENLASTYRPQYQSRALRELFSHYMEAWKSWYSEVVKKPISIS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 694206 696626 + Conep13aG0012100.1 Cone13ag0116 450503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0116 376 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 Gene3D - 146 234 IPR036388 -
Cone13ag0116 376 Gene3D - 18 90 IPR036388 -
Cone13ag0116 376 SUPERFAMILY Winged helix DNA-binding domain 154 233 IPR036390 -
Cone13ag0116 376 FunFam E2F transcription factor-like E2FE 147 234 - -
Cone13ag0116 376 FunFam E2F transcription factor 8 18 90 - -
Cone13ag0116 376 MobiDBLite consensus disorder prediction 130 147 - -
Cone13ag0116 376 MobiDBLite consensus disorder prediction 121 152 - -
Cone13ag0116 376 Pfam E2F/DP family winged-helix DNA-binding domain 153 232 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone13ag0116 376 PANTHER TRANSCRIPTION FACTOR E2F 14 347 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone13ag0116 376 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0116 K09391 - - csv:101219210 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0135 Cone-Chr10:701793 Cone13ag0116 Cone-Chr13:694206 1.30E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone5ag1327 Cone-Chr5:7825728 7.70E-10 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone16ag0130 Cone-Chr16:738356 1.45E-139 wgd
Cone13ag0116 Cone-Chr13:694206 Cone19ag0118 Cone-Chr19:663153 8.36E-242 wgd
Cone13ag0116 Cone-Chr13:694206 Cone2ag0880 Cone-Chr2:34706175 3.17E-141 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44570 PF00069 Pkinase 2.80E-47 CL0016 Cone TF