Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0117 ATGGGAAGCTCAGAGGAGAAGGTGGTTGCTGTAATTATGGTGGGTGGTCCTACAAAAGGTACTAGATTCCGACCCCTGTCGTTGAATATTCCTAAGCCACTTTTCCCTTTAGCCGGACAACCTATGGTTCATCATCCTATTTCTGCCTGTAAAAGGATTCCGAATCTAGCTCAGATCTATCTGATCGGATTCTACGAGGAGCGTGAATTTGCATTATATGTATCCTCAATCTCTAATGAGCTTAAGGTTCCAGTTAGATACTTGAGGGAAGATAAGCCACATGGTTCAGCCGGTGGACTATTTACCTTCCGACACAGGATCATGGAAGATACCCCGTCACACATATTCTTACTCAACTGTGATGTTTGCTGTAGTTTTCCGCTCCCCGAAATGCTCGAGGCACATAGAATATATGGCGGGATGGGAACAATTCTTGCAATCAGGGTTTCTGCCGAATCAGCAGACCAGTTTGGTGAATTGATAGCAGATCCAACCACAAATGAGCTCCTTCATTACACTGAGAAACCCGAAACTTTTGTAAGTGATCTGATCAATTGTGGGGTCTATGTATTTACACCTGATATCTTCACGGCCATTGACGGAGTTTCAACTCAACGGAAAGATAGAGCTAATCTGAGACGGCAATCGAGCTTTGAAGCCCTCCAATCAGCAACAAGGAGTCTGCCCACAAATTTTGTGAGATTGGATCAAGACATCCTATCTCCTCTTGCGGGAAAGAAAAAGTTCTATACATACGAAACAACTACCTTTTGGGAGCAAATCAAAACACCTGGGATGTCGTTGAAATGTTCGGCTTTGTATCTTTCTCAATTTCGTCTCACTAACCCGAAACTATTGGTTAGTGGGGATGGTACAAAGGAGGCAACTATTATTGGTGATGTTTTTGTTCATCCATCTGCAAAAATACACCCAACTGCTAAGATTGGTCCTAATGTTTCGATATCTGCAAATGCTCGAGTTGGAGCTGGTGCAAGGCTCATCTGTTGTATCATCCTTGATGATGTTGAAATCAAGGAAAATGCAGTTGTTAATCATGCAATTATCGGTTGGAAATCATCGGTTGGGCAATGGTCACGAGTCCAGGCTATAGGAGATTACAATGCAAAACTTGGGATAACAATTTTAGGAGAAGCAGTAAATGTTGAAGATGAAGTAGTGGTGATTAATAGCATTGTCCTCCCACACAAGACTCTCAATCTCGGTGTTCAAGGGGAAATTATTCTATAA 1248 42.47 MGSSEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEEREFALYVSSISNELKVPVRYLREDKPHGSAGGLFTFRHRIMEDTPSHIFLLNCDVCCSFPLPEMLEAHRIYGGMGTILAIRVSAESADQFGELIADPTTNELLHYTEKPETFVSDLINCGVYVFTPDIFTAIDGVSTQRKDRANLRRQSSFEALQSATRSLPTNFVRLDQDILSPLAGKKKFYTYETTTFWEQIKTPGMSLKCSALYLSQFRLTNPKLLVSGDGTKEATIIGDVFVHPSAKIHPTAKIGPNVSISANARVGAGARLICCIILDDVEIKENAVVNHAIIGWKSSVGQWSRVQAIGDYNAKLGITILGEAVNVEDEVVVINSIVLPHKTLNLGVQGEIIL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 697011 700251 - Conep13aG0012200.1 Cone13ag0117 450504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0117 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 278 IPR029044 -
Cone13ag0117 415 FunFam Putative GDP-mannose pyrophosphorylase 284 412 - -
Cone13ag0117 415 FunFam Mannose-1-phosphate guanyltransferase alpha 7 278 - -
Cone13ag0117 415 Pfam Nucleotidyl transferase 10 219 IPR005835 GO:0009058(InterPro)
Cone13ag0117 415 CDD M1P_guanylylT_A_like_N 10 274 - -
Cone13ag0117 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 8 357 IPR029044 -
Cone13ag0117 415 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 10 415 IPR050486 GO:0005737(PANTHER)
Cone13ag0117 415 Gene3D Hexapeptide repeat proteins 284 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0117 K00966 - - rcu:8258124 733.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0136 Cone-Chr11:610659 Cone13ag0117 Cone-Chr13:697011 7.72E-234 dispersed
Cone11ag1153 Cone-Chr11:8838909 Cone13ag0117 Cone-Chr13:697011 1.13E-06 dispersed
Cone13ag0117 Cone-Chr13:697011 Cone18ag1344 Cone-Chr18:9283705 5.62E-121 wgd
Cone13ag0117 Cone-Chr13:697011 Cone19ag0119 Cone-Chr19:666242 5.24E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g682 . . Bda06g00574 . Bpe12g00576 Bpe13g00205 Bma06g00254 . . . . . . . Sed08g0170 . Cpe04g01534 Bhi02g00389 Tan09g2197 Cmetu05g0932 . Hepe09g0166 . . Cla06g01633 Cam06g1816 Cec06g1866 . Clacu06g1774 Cmu06g1716 Cre06g2536 . . Cone13ag0117 Cone19ag0119 . . . . Blo13g00041 . Bda11g01604 . Bpe07g00816 . . Bma08g00186 . Cmo10g00163 . . . . . . . . . . . . . . . . . . . . . Lsi06g01515 Csa01g00184 Chy02g02549 Cme02g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001958 2 5 2 3 3 2 2 1 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 2 2 1 4 2 2 67