Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0118 ATGGCGATTTCGGTACCTAGCAGACAGTTATTCATCGATGGCGAATGGAGAGAACCGGTTCTTAAGAAGCGCATACCCATCATCAATCCTTCTACTCAGCAAATCATCGGGGATATTCCTGCTGCTACTCCAGAAGATGTGGAGCTTGCAGTTGATGCTGCAAGGAAAGCCCTAGCTCGGGATAAGGGGAAAGATTGGGCCTCTGCTCCTGGATCTGTACGGGCCAAATATCTGCGGGCTATTGCAGCTAAGGTGGCTGAGAGGAAGACTGAGCTAGCAAAACTTGAAGCCATGGATTGTGGAAAACCTCTAGATGAATCTGCATGGGATATAGATGATGTTTCTGGGTGCTTTGAGTACTATGCAGACCTCGCTGAAGGTTTGGATGCAAAGCAAAAGGCTCCTGTTGCCCTCCCTATGGATACATTCACGAGTTACGTTCTTAAGGAACCTATCGGGGTTGTTGGGTTGATTACTCCATGGAACTATCCTCTATTGATGGCTACATGGAAAGTGGCCCCTGCATTGGCTGCAGGGTGTACGGCCATATTGAAGCCATCTGAATTGGCATCTATAACCTGTTTGGAGCTGGCTGATATATGTAGAGAAGTAGGTCTTCCCAGAGGCGTGCTCAATATCTTGACTGGATTGGGTCCTGAAGCTGGTGCTCCTTTGGCTTCTCATCCACATGTTGACAAGATTGCATTTACTGGCAGCTCTGCTACTGGGAGCAAGGTCATGCAAGCTGCATCTCAATTGGTCAAGCCTGTGTCAATGGAGCTGGGTGGAAAAAGTCCAATTGTTATTTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACGGCGTTTGGTTGCTTTTGGACGAATGGCCAAATTTGCAGTGCGACATCGCGTCTCATTGTGCATGAAAGCATTGCCTCCAAATTTTTGGACAAGCTTGTGAAATTGTGTGAGAACATTAAGATTTCGGATCCTTTGGAAGAAGGTTGTAGGCTTGGGCCTGTGGTTAGTGAAGGACAGTATGAGAAAGTATTGAAGTTTATCGCAACTGCTAAGAATGAAGGTGCTCATATTTTATCTGGCGGGGCCCGTCCAGAGCATCTAAAGAACGGGTTCTTCATTAAACCAACCATCATAACAAATGTTACAAACAAAATGCAAATTTGGAGAGAAGAAGTCTTTGGACCTGTTTTATGTGTTAAAACCTTCAAATCCGAAGAAGAAGCTATTGAATTAGCAAATGACACCCATTATGGGTTAGCCTCTGCTGTCCTATCAAATGATCTGGAACAGTGTGAGCGTGTAGCTAAGGCTTTCCTAACCGGAGTTGTATGGATCAATTGCTCCCAGCCGACTTTCTGTCAAGCACCATGGGGAGGCAGGAAGAGAAGTGGTTTTGGTCGAGAATTAGGAGAATGGGGGCTGGATAATTATCTGAACGTGAAGCAGGTGACAACATATATATCGAATGATGCATGGGGTTGGTATCAATCTCCTTCCACACTCTGA 1512 45.83 MAISVPSRQLFIDGEWREPVLKKRIPIINPSTQQIIGDIPAATPEDVELAVDAARKALARDKGKDWASAPGSVRAKYLRAIAAKVAERKTELAKLEAMDCGKPLDESAWDIDDVSGCFEYYADLAEGLDAKQKAPVALPMDTFTSYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCTAILKPSELASITCLELADICREVGLPRGVLNILTGLGPEAGAPLASHPHVDKIAFTGSSATGSKVMQAASQLVKPVSMELGGKSPIVIFEDVDLDKAAEWTAFGCFWTNGQICSATSRLIVHESIASKFLDKLVKLCENIKISDPLEEGCRLGPVVSEGQYEKVLKFIATAKNEGAHILSGGARPEHLKNGFFIKPTIITNVTNKMQIWREEVFGPVLCVKTFKSEEEAIELANDTHYGLASAVLSNDLEQCERVAKAFLTGVVWINCSQPTFCQAPWGGRKRSGFGRELGEWGLDNYLNVKQVTTYISNDAWGWYQSPSTL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 701650 705557 - Conep13aG0012300.1 Cone13ag0118 450505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0118 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Cone13ag0118 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491(InterPro)
Cone13ag0118 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Cone13ag0118 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Cone13ag0118 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 501 - -
Cone13ag0118 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 278 - -
Cone13ag0118 503 CDD ALDH_F10_BADH 27 487 - -
Cone13ag0118 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Cone13ag0118 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Cone13ag0118 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0118 Cone-Chr13:701650 Cone8ag0655 Cone-Chr8:6514282 1.31E-119 dispersed
Cone12ag0631 Cone-Chr12:5686090 Cone13ag0118 Cone-Chr13:701650 4.73E-121 wgd
Cone13ag0118 Cone-Chr13:701650 Cone19ag0120 Cone-Chr19:669549 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0118 K00130 - mdm:103455259 893.264