Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0120 ATGGGTAGCATAGGGAATCGGAGGTGCGGTAATCATCATACTAATCATAATACGAATTTCTCTAGCTACCATGAGCGCAAAGCTTCTTCCGACTTATATGATAATCATCATGATTATGATGACGATGATAGCTACTATCATCACCAACATCATCGGCGAGAGAATCCTCCAAAGGAGTACATCTGCTCGATCTCCGGCTCGTTAATGGCGGATCCTGTAATCGTTCCTCCCGGCCAAACGTTTGAGCGAGTTTCCGTCGAGATGTGCAGAGACCTAGGCTTCTTCCCTACGCTCGAGGACGGTTACAAGCTCGATTTCTCCAACGTGATTTCGAATATGGCTTTGAGACGTGCCATACTTAACTGGTGCGATCGTACTGGTACTCCACACCCTCGCACGCCGAATTACTCCACCGTCGAGGGCATTGTCCGTGATTTAATGGCGGAGGATATATTGAAGCAGCAGAAGCAGAGCGCCGCCGCAGGAAGTTCAGAAAGCGAGCTCTTGAGAGGCGTTGCTGATAAACCGCCGGTAACACTCAACCATGCCGAGACCGAAATCCATCCACGAGTCAATCCGTTCGACTCGATCTCCTCCGATAACAACGGCGAACTGCCAGCGATCGGCCGGAAGAGTACAGAAACGCCTCTACCTTTCACCACTCGACCTTCCTGCTACTCTTCTTCTTCGTCTTCGACTGAATTTCCCTCAATTGAAACCCTAAGAAAGTCGGTGGATTCATTTTCGATCGGATCAGAAGAACAGAGGCAACTGATCTCGAAGCTGAACAGTCTTGAAGTTTACGATCAGGAAGAAGCTGTAATTTCTCTGAGAAGAATCACTAGATCCAGCAAGGAAGCTAGGGTTTCACTCTGCACACCTCCGATCCTCTCTGCCCTCCGATCACTGATCTCATCGAGATACTCAAAAGTCCAAGTGAACGCCGTAGCTTCCCTGGTCAACCTCTCGCTGGAGAAGCGGAACAAGGTGCAGATCGTACGGTCAGAATTAGTCACCCCCTTGATCGACATTTTAAGGGCCGGATTCAGTGAAGCGCAGGAACACGCTGCAGGGGCGCTCTTCAGCTTAGCGTTAGAGGACGAAAACAAAATCGCGATCGGAGCCTTAAACGCTCTACCGCCTCTCTTGCACGCTGTCCGATCCGAAAACGAGCGGACTCAGCATGACTCGGGACTCTGTTTGTACCAGCTGAGTCTGACTCAGATCAACCGAGTCAAACTCGTTAAACTCGGCGCCGTTCCGATTCTCATATCAATGGCTAAAGTGAAGAAGTCGGCGAGCTGGGCTTTACTAATTCTATGCAATCTCGCGGTCTGCACGGAGGGGAGGTCGGCGTTGCTGGACGGACATGGGGTGGGGTTTTTGGTCGAGATGTTGAGGGAGAACGAGTCGGGATCCGAGTCGACTCAAGAGACATGTGTTTCTGCACTGCATTCACTGAGTCAGGGCGGCTTGAGGTTCAAAGGGTTGGCGAGGGAGGCGAGGGCGGTGGAAGTGTTGAAGGGTGTTGAAGAGAGAGGGAGTGAGAGAGCCAGAGAGAAGGCAAAGAAGATTTTGCTGATAATGAAAGGGAGAGAGTATGAGGAGGAGGAAGCTAATGGTGGTGAGTCAAACTCGGCGGCGGAAGGTGGTGGACTCAGTTGGACTCGGCCTCGATCCGGCGGTGGAGGAAGAAATTTCCACTCTCCGAACTCTCGTTACACCTCCAATTTTTAA 1737 51.07 MGSIGNRRCGNHHTNHNTNFSSYHERKASSDLYDNHHDYDDDDSYYHHQHHRRENPPKEYICSISGSLMADPVIVPPGQTFERVSVEMCRDLGFFPTLEDGYKLDFSNVISNMALRRAILNWCDRTGTPHPRTPNYSTVEGIVRDLMAEDILKQQKQSAAAGSSESELLRGVADKPPVTLNHAETEIHPRVNPFDSISSDNNGELPAIGRKSTETPLPFTTRPSCYSSSSSSTEFPSIETLRKSVDSFSIGSEEQRQLISKLNSLEVYDQEEAVISLRRITRSSKEARVSLCTPPILSALRSLISSRYSKVQVNAVASLVNLSLEKRNKVQIVRSELVTPLIDILRAGFSEAQEHAAGALFSLALEDENKIAIGALNALPPLLHAVRSENERTQHDSGLCLYQLSLTQINRVKLVKLGAVPILISMAKVKKSASWALLILCNLAVCTEGRSALLDGHGVGFLVEMLRENESGSESTQETCVSALHSLSQGGLRFKGLAREARAVEVLKGVEERGSERAREKAKKILLIMKGREYEEEEANGGESNSAAEGGGLSWTRPRSGGGGRNFHSPNSRYTSNF 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 709968 711924 + Conep13aG0012500.1 Cone13ag0120 450507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0120 578 MobiDBLite consensus disorder prediction 1 21 - -
Cone13ag0120 578 PANTHER U BOX DOMAIN-CONTAINING 43 530 - -
Cone13ag0120 578 Pfam U-box domain 57 124 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0120 578 SUPERFAMILY RING/U-box 50 131 - -
Cone13ag0120 578 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0120 578 MobiDBLite consensus disorder prediction 208 228 - -
Cone13ag0120 578 MobiDBLite consensus disorder prediction 536 578 - -
Cone13ag0120 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 131 IPR013083 -
Cone13ag0120 578 SUPERFAMILY ARM repeat 257 525 IPR016024 -
Cone13ag0120 578 Gene3D - 252 527 IPR011989 -
Cone13ag0120 578 SMART Ubox_2 59 122 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone13ag0120 578 SMART arm_5 407 442 IPR000225 GO:0005515(InterPro)
Cone13ag0120 578 SMART arm_5 446 489 IPR000225 GO:0005515(InterPro)
Cone13ag0120 578 SMART arm_5 325 365 IPR000225 GO:0005515(InterPro)
Cone13ag0120 578 SMART arm_5 366 406 IPR000225 GO:0005515(InterPro)
Cone13ag0120 578 SMART arm_5 284 324 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0120 Cone-Chr13:709968 Cone2ag0153 Cone-Chr2:794797 6.58E-91 dispersed
Cone13ag0120 Cone-Chr13:709968 Cone16ag0127 Cone-Chr16:718916 1.57E-112 wgd
Cone13ag0120 Cone-Chr13:709968 Cone19ag0122 Cone-Chr19:685798 6.01E-265 wgd
Cone13ag0120 Cone-Chr13:709968 Cone2ag0881 Cone-Chr2:34729517 1.27E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0120 - - - 0.0