Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0127 ATGCATGGGCTTGGAGGTGAGGAGAGGAAGAGGAGTCGGCACATGTGGAAAGTCTCTCATCGTGGGACCTCGATCGTAGTAGCTGATGGTTCTTCGTCTTCGCCTAATTCATTTCTCAAGGACGGACGAAAGATTGGTGTTGGTGACTGTGCTCTTTTCAAACCGCCCCGGGATTCTCCACCTTTCATTGGTATTATTCGGTGGTTGACTACTGGTAAAGAGAATAATAAGTTAAAGTTAGGTGTAAATTGGCTCTATCGCTCATCTGAAGTAAAGCTTGGCAAGGGCATCCATTTGGAAGCTGCCCCAAACGAAATCTTCTATTCCTTTCACAAGGATGAGATTCCAGCTGCGTCATTACTACATCCATGTAAAGTTGCATTCCTTCCCAAAGGCATTGAACTTCCATCTGGAATCTCTTCATTTGTGTGCTGGCAGGTCTATGACATTACAAACAAGTGCTTATGGTGGTTAACGGATCAGGATTATATTGATGAACGGCAGCAAGAAGTAGATCAACTTTTAAATATGACACGAATAGAAATGCATGCAACAATGCAACCTGGTGGACGTTCATCTAAGCCAGTGAGTGTTCCAACTTCGACATCACAGTTGAAGGTTAGTTCGGATAGTGTGCCTAACAGTGCATCAACATTTCCTTCCTCTCAAGTTAAAGGAAAGAAAAGAGAGAGGGGTGAACAGGGCTTTGAACCTATCAAACGGGAGCGTAGTGCAAAAACAGATGATGGGGATTCTGCTAACTGCAGATTGGAAAGCAATTTGAAGTCTGAAATTGCTAAAATTACAGAGAAAGGAGGTCTTGTAGATTACGAAGGAGTTGAGATATTGGTGCAGTTATTGTTGACTGATAGAAGTGAGAAAAAAATTGATTTGGCTGGTAGATCAATGCTTGCTGGTGTAGTAGCAGCTACAGATAAGATTGAATGCCTCAATCAGTTTGTTCGTCTAAAAGGTTTGCCTGTGTTCGATGAATGGCTTCAAGAGGTTCACAGGGGAAAAATTGGTGATTTTTGCAGTCCCAAGGACAGTGATAAATTTATTGAGGAGTTTCTCTTAATTTTGCTTAGAGCACTTGACAAGCTTCCGGTAAATCTTCCTGAACTACAGATGTGTAACATTGGAAAGTCTGTGAATCACTTGCGTAGCCATAAGAACTTAGAAATCCAGAAGAAAGCCAGGAGTTTAGTAGACACATGGAAGAAACGTGTTGAGGCTGAAATGAACATTAATGATGCAAAGTCTGGTTCGAGTCAGACTGTTGCTTGGTCTGGAAAAACACGCCTTTCTGAAGTTTCTCCAAGTGGGAGAAATCAGGGCCTTTCCTCTGATGCTGCTATCAAGAGTTCCCTTACAGAGCTTTCTACATCCAAAACTGCTTCAGTTAAGCTTGTCCAGGACGAGGGTACTACCAGATCACCATCAGTTTCTCCTGGCTCAATAAAATCGGTGGCATCACCTGCATCAGCAAGTACTAATTCAAAAGATGGGCTATTGAGAACTCATTCTGTTGGTGCTCCCACTGATCTTTCTCAAACAACAGCTAGGGACGAGAAGAGTAGCGGCTCTAGTCAGTCCCACAACAACGGTCAATCTTGTTTCAGTGAGCATGGAAAAAGTGGGGGGAAAGAGGATGCAAGAAGCTCTACAGGTGCTTCAATGTGTATGATTAAGATCGCACGTCAGGGAAAATCAGTTAATGAATCAACTGTCTCAGCTTTCGGGTTAGGCAGAGGTTCAAATCACAAAAACACAGCGTCTGGAACGACAAACGAGAAGGCCCTTGATGGACCCATTGTTGAGGGAATTAGTCACAAGTTGATTGTTAAGACCAGTAATCGAGGTCGTAATAATCCTGCACAATTATCCAGTGGAGGGTCACCTGAAGACCCTACCGTAATGAGTAGCAGGGCTTCTTCCCCTGTGCTTTCAGATAAGCAGGATCACTTTGATCGTAGCTCAAAAGAAGAGAATGACTCTCTTCAAGCTAATATTAATTCAGATATGGATACTGAGTCCAAGGACTTAGTGACTGGATCTGATAATGGTGAGGGATCCCTTGCTGCAGTTAATGGTGAAGAATGCTGTAAGACAGGCGAGGAGCCTGTAGTATCAAAAACTGCTTCCTCGCCTGTGGGAAATGAACATAAAAGCATGGCTTTACAGGAAACTGCTTTCAAATCTGGAAATGTGTTAGCTGAGGGTTCTGTCAAGCACTCCGGATCTAGTATGACTACTTCAGGTATAAACAATGTTGGGACTAGTCTACTGGTTAGTGTGGCTACTGAAGATCTGTCCAAGTCTGATTTGATTTCACCAATTGATTACCTGCATAACAGCACCCCAGTAAAAGAGTCTCCTAAAGAAGAGCTTGCTAGAGACGAAAAAGAGTCTAGTGATGGTGTTGATATAAAATGTCTGGGTATAGTTACTGATAGTATTGGGGCTAAGAGTTGGGACCCTAAACCAACTACTCCAAAATCCGAGGATAATCCTGATGGGGAGCTCAATGGACATTCCAACTCTTCTGGTGTAAAAGTTAATGAAAGTGTAGTAGATGCATCAGCCATAGATAATAATGGAAACAAATCACATAAGGATACAAAAAAGACAGATGATGAATTGAATGGAGATGACAATTCAGATTCTAAACCAAGATCGTCAAGCTCTTCAGCAGATGAAGAGAAAAGCCATAGTCCTAGGTCAACTCCAGATGTTGAGGGTGATGCCATCGTGGGAAAACCCAAGACAAATCCATTCCTAGAAGTTAATGGAGGAAAAAACAATAGCTCTACAAACAAGTTGTTGAATGGTATTGCTCCTGCAGAGAAAAGTTCATCTTACATGATGCATTCTGATTCAGCTAAAGGAACTACTGATGAAGCGTTGCAGACTTCTGGGTCTATGAAAGTTCCGGCTTCAGAAAATGCTAGCAAAATGATAACTGAAGAGGTTGACAAAATGGAGGCAGAAACTGCTGCTAATCGAATAGAGAAACAGCAATCCAAGTGTGATGTTTCTCTGGCTTCCGAGAATCAAGGTTTAGTTGGTTTGGCTACAGCTACTACAAATCATGACGGTGAGAATAAGGAGGGGGTTTTGGAAACAAGGGAGGTTAATGAAAAAAATGAGGAACGGGGCAATAAGAAGAGACCACTCGCGTCCTCTAACTTAACTGGTGTGAAAGCAGAGGAATCTGCATCTTCTGCAGCAGATACTTCTTCTATATCTGCTGTAGCGGTGCCAACAGATAAGGTGGGTCCTAAGGTGGGTCCTAAGGTGGAATTTGATTTGAATGAAGGTGTTAATGTGGATGGGAAGAAATGTGGGGAGGAGCCAAATAACGGGACAACAGCTGTCAAGTTAATCAGCCCATTACCCCACGCCGTCTCTTCTGTCTCAAGCACCCTTTTGGCTCCAATTACTGTGGCTGCTGCTGCAAAAGGGCCCTTTGCTCCACCTGATGACCTATTGAGGAGCAAAGGTGAACTTGGTTGGAAAGGTTCCACTGCAACAAGTGCGTTTCGACCTGCTGAACCAAGAAAGGCATTTGAGATGCCATCTGCAACAAGTACTACGCCAATACCTGATTCTACCACTGGAAAAAGCAGTAGCCATCTTCCATTGGATATTGACTTGAATGTACCTGATGAGAGAATCTTGGAAGATATGAATCCACAAGGGTCTTGTCCCAGAACAAGTTCTTGGTCTGACCCGAAAAGCAGTCTTGATTTGACATGTGGTATTGGCTCTACTGCACCTCCTGTTCGTGGTTTTGGAGGACTTGATCTTGACTTAAACTGTAGTGACGAAGCTCCTGAGGTGACCAATCTTTCGGCTAAAAGCATTTGTAGGGTAGGCATCCCAGTTGGGAACAAATTATCTAGTCTTCAACTTAATGGAGATGCGGGCTTTCGCAGGGACTTTGATTTGAATGGGCCTATGGCAGAAGAACCCGTTGTTGAACTGTCACCATTTAGTCAGAATTCAAGACGAGCTGTGGGTCCTGCTCAACCACCTGTTTCTGGTCTTTGGATGAACAATGCAGAAATGGGGAGCTTCTCATCATGGTTTTCTCCTGGAAACACGTGCCCAGCTGTTGCGATTCCATCAATCATGCCTGATAGAGTAGCAGCAGAGCAGCCTTTTCCGATCATTGCAGCTAGTGGGCTGCCCCCAAGGATGTTGGGCCCGACTAATGGTGGCGGCAGCAGCGGCCCATTTAGCCCTGATGCTAACCATGGGTCGGTGTTGTCCTCTTCTCCTGTGTTGCCCTTTGCGTCCACTTCTTTCCAGTACTCTGCTCTCCCATTTGGAAACAGCTTTCCTATGCAGTCAAGGACCAGTTTTTCAGGGGATCCAACGACGTATATGGATTCACCATCTGGCAGTAGGCTTTACTTCCCTGCAGTCCACTCACAGTTTGTAGGACCTTCCGGTTCAGTCTTGACTCATTATCCAAGACCATATGTTACCAGTCTCTCTGATGGTGGCAATAATAATAATAATACTAGTGCTGAATTCAATAAGAAGTGGGGAAGGCAGGGGTTTGACCTAAATGATGGCCCTGGAGCTGGTCCAGACATGGAAGGGAGAGATGAGAGTTCACCCCTTGCACTTAGGCAACATTTTGTTTCCGGTTCAAATGGCTTAGCTTTGAAGAGGAAGGAGCCAGAGGGTGGCAGGGATGCCTATAAATAA 4719 44.18 MHGLGGEERKRSRHMWKVSHRGTSIVVADGSSSSPNSFLKDGRKIGVGDCALFKPPRDSPPFIGIIRWLTTGKENNKLKLGVNWLYRSSEVKLGKGIHLEAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGIELPSGISSFVCWQVYDITNKCLWWLTDQDYIDERQQEVDQLLNMTRIEMHATMQPGGRSSKPVSVPTSTSQLKVSSDSVPNSASTFPSSQVKGKKRERGEQGFEPIKRERSAKTDDGDSANCRLESNLKSEIAKITEKGGLVDYEGVEILVQLLLTDRSEKKIDLAGRSMLAGVVAATDKIECLNQFVRLKGLPVFDEWLQEVHRGKIGDFCSPKDSDKFIEEFLLILLRALDKLPVNLPELQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSSQTVAWSGKTRLSEVSPSGRNQGLSSDAAIKSSLTELSTSKTASVKLVQDEGTTRSPSVSPGSIKSVASPASASTNSKDGLLRTHSVGAPTDLSQTTARDEKSSGSSQSHNNGQSCFSEHGKSGGKEDARSSTGASMCMIKIARQGKSVNESTVSAFGLGRGSNHKNTASGTTNEKALDGPIVEGISHKLIVKTSNRGRNNPAQLSSGGSPEDPTVMSSRASSPVLSDKQDHFDRSSKEENDSLQANINSDMDTESKDLVTGSDNGEGSLAAVNGEECCKTGEEPVVSKTASSPVGNEHKSMALQETAFKSGNVLAEGSVKHSGSSMTTSGINNVGTSLLVSVATEDLSKSDLISPIDYLHNSTPVKESPKEELARDEKESSDGVDIKCLGIVTDSIGAKSWDPKPTTPKSEDNPDGELNGHSNSSGVKVNESVVDASAIDNNGNKSHKDTKKTDDELNGDDNSDSKPRSSSSSADEEKSHSPRSTPDVEGDAIVGKPKTNPFLEVNGGKNNSSTNKLLNGIAPAEKSSSYMMHSDSAKGTTDEALQTSGSMKVPASENASKMITEEVDKMEAETAANRIEKQQSKCDVSLASENQGLVGLATATTNHDGENKEGVLETREVNEKNEERGNKKRPLASSNLTGVKAEESASSAADTSSISAVAVPTDKVGPKVGPKVEFDLNEGVNVDGKKCGEEPNNGTTAVKLISPLPHAVSSVSSTLLAPITVAAAAKGPFAPPDDLLRSKGELGWKGSTATSAFRPAEPRKAFEMPSATSTTPIPDSTTGKSSSHLPLDIDLNVPDERILEDMNPQGSCPRTSSWSDPKSSLDLTCGIGSTAPPVRGFGGLDLDLNCSDEAPEVTNLSAKSICRVGIPVGNKLSSLQLNGDAGFRRDFDLNGPMAEEPVVELSPFSQNSRRAVGPAQPPVSGLWMNNAEMGSFSSWFSPGNTCPAVAIPSIMPDRVAAEQPFPIIAASGLPPRMLGPTNGGGSSGPFSPDANHGSVLSSSPVLPFASTSFQYSALPFGNSFPMQSRTSFSGDPTTYMDSPSGSRLYFPAVHSQFVGPSGSVLTHYPRPYVTSLSDGGNNNNNTSAEFNKKWGRQGFDLNDGPGAGPDMEGRDESSPLALRQHFVSGSNGLALKRKEPEGGRDAYK 1572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 738957 745667 + Conep13aG0013200.1 Cone13ag0127 450514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0127 1572 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 285 414 IPR035441 -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 468 542 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 650 664 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 894 909 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 841 865 - -
Cone13ag0127 1572 CDD TFIIS_I 335 411 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1192 1213 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 421 450 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 788 808 - -
Cone13ag0127 1572 SMART BAH_4 43 159 IPR001025 GO:0003682(InterPro)
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 783 941 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 665 686 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 953 981 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 616 694 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 866 887 - -
Cone13ag0127 1572 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1571 - -
Cone13ag0127 1572 Pfam BAH domain 44 152 IPR001025 GO:0003682(InterPro)
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 616 649 - -
Cone13ag0127 1572 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 424 IPR035441 -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 953 984 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 184 254 - -
Cone13ag0127 1572 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 580 602 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1499 1516 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1058 1086 - -
Cone13ag0127 1572 Gene3D - 31 263 IPR043151 -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 224 254 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1034 1057 - -
Cone13ag0127 1572 ProSiteProfiles BAH domain profile. 43 159 IPR001025 GO:0003682(InterPro)
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1026 1098 - -
Cone13ag0127 1572 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Cone13ag0127 1572 SMART TFS2_5 333 412 IPR003617 GO:0005634(InterPro)
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1498 1572 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 580 598 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 190 223 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 468 555 - -
Cone13ag0127 1572 MobiDBLite consensus disorder prediction 1174 1215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0127 Cone-Chr13:738957 Cone18ag1352 Cone-Chr18:9312177 7.43E-248 dispersed
Cone11ag0129 Cone-Chr11:576310 Cone13ag0127 Cone-Chr13:738957 1.37E-263 wgd
Cone13ag0127 Cone-Chr13:738957 Cone18ag1351 Cone-Chr18:9305791 7.22E-272 wgd
Cone13ag0127 Cone-Chr13:738957 Cone19ag0131 Cone-Chr19:713065 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44571 PF09429 Wbp11 2.40E-23 No_clan Cone TR