Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0142 ATGGACTGCCTTGTGGCAGGAGCAAATTTTTTGCTTAAGGCAATACGTCATGAAGCATTCACACATATGGAAGGTCAGAAAGAGTTTGTGCAGCTTGACCATAATGAACTGTTCCCATATCTTCTCGTAAATATCGGTTCTGGCGTTAGCCTTATCAAGGTTGATGGCGAAGGAAAGTTTCAAAGGGTTAGTGGAACAAATGTTGGAGGTGGTACTTATTGGGGATTGGGAAGGCTACTAACAAAATGCAAGAGTTTTGATGAGCTGCTAGAGCTCAGCCAGAAGGGGAATAATAGGACGATTGACATGCTTGTTGGGGACATTTATGGTGGTATGGATTACTCTAAGATTGGTCTCTCCGCATCAACCATTGCTTCTAGTTTTGGCAAAGTTGTTTCAGAAAACAAGGAACTTGAGGACTATAGACCTGAAGATATTTCTCTTTCTTTGTTACGAATGATTTCATATAATATTGGCCAAATATCTTACCTAACTGCACTACGCTATGGGCTCAAGCGGATATTTTTTGGAGGATTTTTTATAAGGGGTCATGCGTATACCATGGACACAATTTCCTTTGCAGTTCAGTTCTGGTCAAAAGGAGCAGCACAAGCAATGTTCCTACGGCATGAAGGCTTTCTGGGAGCCTTAGGTGCTTTCATGAGCTATGAAAAGCATGGACTTGATGATTTGATGGTACATCAGCTGGTTGAAAGATTTCCAATGGGTGCACCATACACAGGGGGAAAGATCCATGGCCCTCCACTTGGAGATCTGAATGAGAAGATTTCTTGGATGGAGAAGTTTGTCCAAATGGGAACTGAAATTACTGCTCCTGTACCCATGGATCCTCCTGGAACTACTGGGCTTGGTGGCTTTGAAGTTCCTTTATCAAAAGGAGGTACCCTTCGCTCTGATGCAAGCGCCTTGAATGTTGGCGTTCTCCACTTGGTTCCAACTTTGGAGGTGTTTCCTTTATTGGCAGACCCGAAATCGTACGAGCCTAACACAATTGACCTCTCAGATCACAGTGAGTTCCAGTATTGGTTTACTGTGCTGTCAGGGCATTTGCCAGACCTTGTGGATAAGGCAGTAGCAAGTGAGGGTGGCACCGATGATGCAAAGAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACTTGCGGAGGTTAATGGAGGAACCTGCTGCATATGGGAAGTTAGGATTGGCCAACCTATTGGAACTGAGGGAAGAGTGCCTGAGGGAGTTCCACTTTGTTGATGCCTACAGGAGTATAAAACAGAGAGAAAATGAGGCGTCCCTTGCTGTTTTACCTGACCTACTGCTAGAGCTTGATAGTTTGAGTGAGGAAACCAGATTGCTTGCCCTAATTGAGGGTGTTCTGGCTGCAAACATTTTTGATTGGGGATCCCGTGCCTGTGTGGATCTCTATCACAAAGGGACAATTATTGAAATTTACAGAATGAGTCGCGATAAAATGCAAAGACCATGGCGTGTGGATGATTTTGATGTCTTTAGGGAGAGAATGTTAGGGTCTCCAAACACGAAGCCTCGCCCACATAAAAGAGCTTTACTATTTGTGGACAACTCAGGCGCTGATATTGTTTTAGGGATGCTTCCCCTAGCTAGGGAACTCCTCAGGCGTGGGACTGAAGTGGTTTTGGTTGCAAACTCTCTCCCTGCTCTAAATGATGTAACTGCCATGGAGCTTCCTGAAATTGTTGCTGAGGCTGCAAAGCATTGCGACATACTCCGCAGAGCTGCTGAAGCTGGAGGCTTACTTGTGGATGCCATGATCAACACCTCGGATGGTTCTAAAGAAAATTCTTCTTCAGTTCCATTAATGCTTGTTGAGAATGGATGCGGCAGCCCATGCATAGACTTAAGACAGGTCAGCTCTGACCTAGCAGCTGCTGCAAAAGATGCCGATCTGGTCATCTTGGAAGGGATGGGCAGAGCTCTTCATACCAACTTCAATGCCCAGTTTAAATGTGATGCTCTAAAGCTTGCAATGGTTAAAAATCAGCGTTTGGCTGAAAAATTGATTCAAGGAAACATCTACGACTGCATCTGTAGATATGAACCAGCTAGTTGA 2100 44.86 MDCLVAGANFLLKAIRHEAFTHMEGQKEFVQLDHNELFPYLLVNIGSGVSLIKVDGEGKFQRVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQKGNNRTIDMLVGDIYGGMDYSKIGLSASTIASSFGKVVSENKELEDYRPEDISLSLLRMISYNIGQISYLTALRYGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGAAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKISWMEKFVQMGTEITAPVPMDPPGTTGLGGFEVPLSKGGTLRSDASALNVGVLHLVPTLEVFPLLADPKSYEPNTIDLSDHSEFQYWFTVLSGHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPAAYGKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLLELDSLSEETRLLALIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRDKMQRPWRVDDFDVFRERMLGSPNTKPRPHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPEIVAEAAKHCDILRRAAEAGGLLVDAMINTSDGSKENSSSVPLMLVENGCGSPCIDLRQVSSDLAAAAKDADLVILEGMGRALHTNFNAQFKCDALKLAMVKNQRLAEKLIQGNIYDCICRYEPAS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 895821 902921 - Conep13aG0014700.1 Cone13ag0142 450529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0142 699 Gene3D - 335 421 IPR035073 -
Cone13ag0142 699 Pfam Fumble 1 221 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cone13ag0142 699 NCBIfam type II pantothenate kinase 1 222 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cone13ag0142 699 SUPERFAMILY Actin-like ATPase domain 2 223 IPR043129 -
Cone13ag0142 699 FunFam Pantothenate kinase 2 18 203 - -
Cone13ag0142 699 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 500 697 - -
Cone13ag0142 699 Pfam Damage-control phosphatase ARMT1-like domain 373 683 IPR002791 -
Cone13ag0142 699 PANTHER PANTOTHENATE KINASE 1 695 IPR004567 GO:0004594(InterPro)|GO:0004594(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(PANTHER)|GO:0015937(InterPro)
Cone13ag0142 699 Gene3D - 18 203 - -
Cone13ag0142 699 FunFam Pantothenate kinase 2 335 421 - -
Cone13ag0142 699 SUPERFAMILY AF1104-like 314 697 IPR036075 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0142 K24265 - - rcu:8288998 1266.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1207 Cone-Chr10:8954340 Cone13ag0142 Cone-Chr13:895821 5.26E-64 dispersed
Cone13ag0142 Cone-Chr13:895821 Cone3ag1254 Cone-Chr3:31377721 1.01E-57 dispersed
Cone12ag0648 Cone-Chr12:5915963 Cone13ag0142 Cone-Chr13:895821 1.16E-124 wgd
Cone13ag0142 Cone-Chr13:895821 Cone16ag0101 Cone-Chr16:576156 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39