Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0146 ATGGCTACGCATCAAAAACCAGAGCTCAGAAATAGCAGAGAGAGAGAGAAAGCGGGTTCACCAATGCCGTGCCCTTCTAGTGAAGCGGGACTCGAAGCACTAAATCTCCTCAAGTCTTCAGACCCTCCACTCTGGTTAGCACCAAGCAATTCACTGTCCGAAGCCGCTCGCACCGCCTCACAGTACCTTTTCTCCGCTCTCAAACCGTTTACTCCCAAATCTCCGTTCGATCGGCTTCTGGTTGAGGGATTTGATGCTGAGCAGATATGGCAGCAAATTGACCTCCAATCACAACCTCTCTTGTCAAGTATTCGTAGGGATTTGAAGCGGTTCGAAAGGAATCCTGAACAACTCTTGAAGCTCAAAGTGGTTCTGGAAGGCGAGAAGAAGGAAGAGAAGAAGAAATATGCGGATTTGGAGGATGAAAGAGATGGCCTTTTAGATGAATTTGAGGAATTTGATGAAGACAAAGATGGAGGAGAAGATGATAATGAGGAAGAGGAGGAGGAGGATGAAGAAGAAGAGGAGGAGAGAGGGACGGAAGGTGGAATTGAAGATGGATTCTTGAAGACAAAGGAATTGGAGGAGTTCTTAGACGAGGATGAGGCTAGAGAATATGGTTTAGATAATAATAAGCGAAAGACGAAGAAGAGTGATGAAGATGAAGAAAGTGATGAGGAAGATGATGACGAGCTTGGAGATTTCAATCTTGGCAGCGACCAGGAGGAAAATGCGAGATATGAAGATTTATTTGGTCCCAAAATGAAAAAACCCGTGAGAAAAACCTCCAAATCGAAAGATGAATCAGAAGAAGACTCGGATTTAGGCGATGAAGAAGACGATGAAGATGGCGATGAAGAACTTCAGAATAAGACAGAAAATCTTTCAACTCATCAAAAACAACTTGAGAAGATTCAATCCGAAATAGAGCAGATGGAAAGGGCAAACTTGGAGCCAAAGTCTTGGACAATGCAAGGGGAGGTAACTGCTGCAAAAAGGCCAAAGAACAGTGCATTAGAAGTTGATCTTGATTTTGAGCACAATGTTAGACCAGCTCCTGTAATCACAGAGGAGGTTACATTGTCACTAGAAGAACTGATCAAGAAAAGGGTCACTGAGGAGCACTTTGATGATGTTCCAAAGGCTAGGAGATTACCTACTAAAGGATCAAGAGAAACCAAAGAGTTGGATGATAATAAAAGCCAGAAGGGTCTTGGTGAAGTCTATGAGGAAGAATATGTTCAGAAAACAAATCTGGCTGCTGCTCCATCATCATTCTCAGATGAAAATCACAAAGAGGCAAGCATCCTGTTCAAGAAACTCTGCTTGAAGTTAGATGCTCTCTCTCATTTCCACTTCACTCCTAAACCTGTTATAGAGGATATGTCTATACAAGCAAATGTCCCTGCTCTTGCAATGGAAGAGATTGCACCTCTTGCTGTCTCAGATGCAGCCATGCTAGCTCCTGAGGAAGTGTTTTCTGGCAAAGGCGACATCAAAGAAGAGGCAGAACTGACTCAGTCAGAGAGAAAGAGGAGAAGAGCTAACAATAAAAGGAAATTTAAGGCAAACACAGCAGCCAAAAAGGCCAGGTACAGCACATTGCCAAAAAAGGATCAAGCCAATGAAGGATCATGA 1638 43.41 MATHQKPELRNSREREKAGSPMPCPSSEAGLEALNLLKSSDPPLWLAPSNSLSEAARTASQYLFSALKPFTPKSPFDRLLVEGFDAEQIWQQIDLQSQPLLSSIRRDLKRFERNPEQLLKLKVVLEGEKKEEKKKYADLEDERDGLLDEFEEFDEDKDGGEDDNEEEEEEDEEEEEERGTEGGIEDGFLKTKELEEFLDEDEAREYGLDNNKRKTKKSDEDEESDEEDDDELGDFNLGSDQEENARYEDLFGPKMKKPVRKTSKSKDESEEDSDLGDEEDDEDGDEELQNKTENLSTHQKQLEKIQSEIEQMERANLEPKSWTMQGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTLSLEELIKKRVTEEHFDDVPKARRLPTKGSRETKELDDNKSQKGLGEVYEEEYVQKTNLAAAPSSFSDENHKEASILFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPLAVSDAAMLAPEEVFSGKGDIKEEAELTQSERKRRRANNKRKFKANTAAKKARYSTLPKKDQANEGS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 917214 921152 + Conep13aG0015100.1 Cone13ag0146 450533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0146 545 MobiDBLite consensus disorder prediction 143 181 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 241 270 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 204 220 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 182 197 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 221 237 - -
Cone13ag0146 545 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 25 534 IPR012173 GO:0005634(InterPro)|GO:0005732(InterPro)|GO:0006364(InterPro)|GO:0032040(PANTHER)|GO:0034457(InterPro)|GO:0034457(PANTHER)
Cone13ag0146 545 MobiDBLite consensus disorder prediction 512 526 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 1 17 - -
Cone13ag0146 545 Pfam Mpp10 protein 71 528 IPR012173 GO:0005634(InterPro)|GO:0005732(InterPro)|GO:0006364(InterPro)|GO:0034457(InterPro)
Cone13ag0146 545 MobiDBLite consensus disorder prediction 271 288 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 130 306 - -
Cone13ag0146 545 Coils Coil 122 177 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 378 406 - -
Cone13ag0146 545 Coils Coil 288 318 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 1 28 - -
Cone13ag0146 545 MobiDBLite consensus disorder prediction 503 545 - -
Cone13ag0146 545 PIRSF snoRNP_Mpp10 253 544 IPR012173 GO:0005634(InterPro)|GO:0005732(InterPro)|GO:0006364(InterPro)|GO:0034457(InterPro)
Cone13ag0146 545 PIRSF snoRNP_Mpp10 31 275 IPR012173 GO:0005634(InterPro)|GO:0005732(InterPro)|GO:0006364(InterPro)|GO:0034457(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0146 K14559 - - vvi:100241507 531.176
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g767 . . . Bda15g00553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0146 . . . . . . . . . . . . Bma08g00098 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010218 1 5 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 3 1 32