Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0150 ATGATGTGCAGTCCGAAGACGCCGTCGAAGTACGATAGCGCCTCGAATTTCAAATCTCTGATGGAGAAACTCTCTAAAAGAGTCGAGAAAGATAATTGGGGAACCGAAGATTTCGAGAAGAAACCGGAGCATTTTTATGGATTAGGACAGTGCTATGGTGATCTCTCGAACTCCGATTGCTCTCAATGCTTTTCTCATTCTAGGAAAGATCTTCGCAGGTGTCTTCCGACGGATAAAGGTCGGATCTATCTCGACGGTTGTTTTCTTCGTTTCGACAATTACAATTTCTTTAACGAGAGTCTTGATCCTGAGCACGACATTGTGAAATGTGGATGCCCAACGACGGACATCGATAAGGACAATATCGACAAAGATGCGTTTTCTGCGAAAGTTGAGCGAGTTATTTCGAATGTGACGGAAATGGCGTTTAACAATCAAGGTTTTGCGGTGACTGGGGAAAAAGGAGGTGAGGGAGTTGAAGAAGGTGTTTATGCTTTGGCACAGTGTTGGATGAGTGTTGAAAAAGATGATTGTATGCTGTGCTTGAACAATGCACGATCTGAGCTCAAGAAATGTGCGCCAGGGAGAGGGGGTACGGCTCTGTATACAGGTTGTTTTATTAGGTATTCAACAGAGAGCTTCTACACCATGAGCTCAACCGATGATGATGATCATGAAGATTATTACGATGATAATGATGATGATGTTGATGTTGATGAAGTTCAAGTAGTTCGTCGAACAAAAGTTTGGCCCATGATAGCAGTCACGGCTGGAGCAGTTTTCTTCGCTGTTCTTGTTGTATCTGTATTTGTTTTTCGTATAGGATATAATAAACTGTCAAAGAAGACCCGTGCTGATACTCTCAGTTTGAGTTCATTTTCGAAGTTGAATTTCAAGTACGAAGTGCTCGAAAAAGCTACCAATAATTTCAATCCCTCAAGGAAATTAGGCCAAGGTGGAAGCGGTTCAGTATTTAAGGGCGTCCTTCCTGATGGAAGAAACATTGCAGTTAAAAGATTGTTCTTCAACACCCGGCAATGGGTAGACGAATTCTTCAATGAAGTAAATCTTATTGGTGGAATTCAACACAAGAACCTTGTCAGGCTATTGGGTTGCAGCATTGAAGGCCCGGAAAGTCTTCTGGTTTATGAATTCATACCAAACAAAAGCCTTGATCAAATTCTTTTCCTGAAGGACTCAGCCCATATACTAAATTGGCACCAGCGCTTTGATATTACTCGTGGAATAACGGAGGGCCTTGCATTTCTTCATGGAGGTTGTGGAGTGAAAATTATCCACAGAGATATAAAATCCAGCAATATTCTCCTTGATGAGGATCTTACTCCCAAGATTGCTGATTTCGGCCTTGCTAGATGCCTTGCTTCGGACAAATCTCATATTAGCACTGGAATTGCTGGGACACTTGGATATATGGCTCCAGAGTATCTTGTTCGAGGACAATTAAACGAGAAGGCAGATGTTTATGCTTTTGGTGTGGTAATTCTTGAGATCCTCTGTGGCAGAAAGAACACAGTTTTCACTCAAGGGCCAAGCTCTGTATTGCATGCTGTTTGGAAGAATTACAAGGCAAAACAGATTACAGAATCAGTAGATCCCGTCCTGAGCGGTTGCTTTCCTGAAAGAGAAGCATCAAAAGTGCTTCAAATCGGGCTCTTATGCACTCAAGCCTCGGTTGCTCTACGACCTTCTATGTCAGAAGTAGTTCAAATGCTGACCAATGAAGATTCCGTAATTCCTTCACCAAACCAACCACCATTCCTCAATGCAAGTGTTCTAACGCCAGAGGATACAACTGATGGCTCCACCATGAACAGTATACACCCGGAATCAGACAATCCCGATCCGAATGGCCCATCTTTATCTCATGCATCTGGTGAACTGTAA 1905 42.73 MMCSPKTPSKYDSASNFKSLMEKLSKRVEKDNWGTEDFEKKPEHFYGLGQCYGDLSNSDCSQCFSHSRKDLRRCLPTDKGRIYLDGCFLRFDNYNFFNESLDPEHDIVKCGCPTTDIDKDNIDKDAFSAKVERVISNVTEMAFNNQGFAVTGEKGGEGVEEGVYALAQCWMSVEKDDCMLCLNNARSELKKCAPGRGGTALYTGCFIRYSTESFYTMSSTDDDDHEDYYDDNDDDVDVDEVQVVRRTKVWPMIAVTAGAVFFAVLVVSVFVFRIGYNKLSKKTRADTLSLSSFSKLNFKYEVLEKATNNFNPSRKLGQGGSGSVFKGVLPDGRNIAVKRLFFNTRQWVDEFFNEVNLIGGIQHKNLVRLLGCSIEGPESLLVYEFIPNKSLDQILFLKDSAHILNWHQRFDITRGITEGLAFLHGGCGVKIIHRDIKSSNILLDEDLTPKIADFGLARCLASDKSHISTGIAGTLGYMAPEYLVRGQLNEKADVYAFGVVILEILCGRKNTVFTQGPSSVLHAVWKNYKAKQITESVDPVLSGCFPEREASKVLQIGLLCTQASVALRPSMSEVVQMLTNEDSVIPSPNQPPFLNASVLTPEDTTDGSTMNSIHPESDNPDPNGPSLSHASGEL 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 946347 949490 - Conep13aG0015500.1 Cone13ag0150 450537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0150 634 Pfam Salt stress response/antifungal 3 94 IPR002902 -
Cone13ag0150 634 Pfam Salt stress response/antifungal 112 211 IPR002902 -
Cone13ag0150 634 SUPERFAMILY Protein kinase-like (PK-like) 296 598 IPR011009 -
Cone13ag0150 634 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 131 606 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone13ag0150 634 CDD STKc_IRAK 316 580 - -
Cone13ag0150 634 MobiDBLite consensus disorder prediction 582 634 - -
Cone13ag0150 634 ProSiteProfiles Protein kinase domain profile. 310 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0150 634 ProSiteProfiles Gnk2-homologous domain profile. 1 96 IPR002902 -
Cone13ag0150 634 FunFam Cysteine-rich receptor-like protein kinase 3 111 214 - -
Cone13ag0150 634 Pfam Protein kinase domain 312 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0150 634 Gene3D Transferase(Phosphotransferase) domain 1 386 586 - -
Cone13ag0150 634 SMART serkin_6 310 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0150 634 Gene3D Phosphorylase Kinase; domain 1 273 385 - -
Cone13ag0150 634 ProSiteProfiles Gnk2-homologous domain profile. 105 214 IPR002902 -
Cone13ag0150 634 Gene3D - 107 214 IPR038408 -
Cone13ag0150 634 Gene3D - 2 96 IPR038408 -
Cone13ag0150 634 FunFam Cysteine-rich receptor-like protein kinase 2 386 586 - -
Cone13ag0150 634 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
Cone13ag0150 634 FunFam Cysteine-rich receptor-like protein kinase 2 278 385 - -
Cone13ag0150 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0150 634 MobiDBLite consensus disorder prediction 582 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0150 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0150 Cone-Chr13:946347 Cone2ag0112 Cone-Chr2:550324 1.11E-205 dispersed
Cone11ag0105 Cone-Chr11:455161 Cone13ag0150 Cone-Chr13:946347 1.61E-109 wgd
Cone12ag0658 Cone-Chr12:6028821 Cone13ag0150 Cone-Chr13:946347 3.34E-150 wgd
Cone13ag0150 Cone-Chr13:946347 Cone16ag0935 Cone-Chr16:9517690 5.89E-191 wgd
Cone13ag0150 Cone-Chr13:946347 Cone8ag0679 Cone-Chr8:6769285 1.18E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g778 Blo04g00730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82001 PF02319 E2F_TDP 3.10E-20 CL0123 Cone PK