Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0151 ATGGAGGAACTGTACGGTGCACTCCACACCGTCTCCGGTAATCATTACTATTATCGTGACCAGCCTGCTCCATTAACGGCAGTACCACCACCCCCGCCGCCACCCGATCATCTTCCTGATCAAAATAAAAACAGTATCAACCTCATCTTTCCGGCTGTTATCAATAATTATTATGACCATGATGATCGGAATATCCTCTCGTTCGGTTCGACAGGCCGGTCGATTTCGGGTTCGTCCTCTTCAATTAATAATTCAACAGGTGGTCTTCATGATCATGATCTTCGTAACGATGAGTTTTCCAGTGCAATCAGACTCAAAATCGCTTCTCATCCTCTTTACCCTAAACTCCTCCAAGGCTATATCGATTGCCAGAAGGTGGGCGCACCGCCCGAAATAGTGCGTCTGTTGGACGGAGTCCGACCAGGAAGTCATGCTATTTACAAGAGAACCACCGACGACGTCGTTTCGTCTTCCGATCCTGAACTCGACGATTTCATGGAAACGTATTGTGGAATAATGACGAAGTATAAATCGGATCTGGCAAGGTCATTTGATGAAGCTACCTCCTTCCTCAACACCATCGAAACGCAGCTCAAAACGCTTTGCAACGACGTCCCTACAACAAGCTATGTTTCTGATGATGCTGCCGGTCCGTCCGATGATGATCTGAGCGCTGGAGAGATTGATTTACAAGAATGCCCACATCAGACGAATGGAGATCGAGAGTTGAAGGAAAAACTCTTGCGCAAATATAGCGGTTACATTAGTACCTTAAAGCAAGAGTTCTCCAAGAAGAAGAAGAAAGGGAAGCTACCTAAAGATGCAAGGCAAATCCTTCTTGACTGGTGGAATCTTCACTACAAATGGCCTTACCCCACGGAGGGGGACAAAGTTGGGTTGGCTGAATTAACAGGGCTATATCAGAAACAGATAAACAACTGGTTTATAAATCAAAGGAAGAGGCATTGGAAGCCATCTGAAAACATGCAATATGCTGTTATGGACAGTCTTTATGGGTGTTCCTTTTGTGACTAA 1035 45.41 MEELYGALHTVSGNHYYYRDQPAPLTAVPPPPPPPDHLPDQNKNSINLIFPAVINNYYDHDDRNILSFGSTGRSISGSSSSINNSTGGLHDHDLRNDEFSSAIRLKIASHPLYPKLLQGYIDCQKVGAPPEIVRLLDGVRPGSHAIYKRTTDDVVSSSDPELDDFMETYCGIMTKYKSDLARSFDEATSFLNTIETQLKTLCNDVPTTSYVSDDAAGPSDDDLSAGEIDLQECPHQTNGDRELKEKLLRKYSGYISTLKQEFSKKKKKGKLPKDARQILLDWWNLHYKWPYPTEGDKVGLAELTGLYQKQINNWFINQRKRHWKPSENMQYAVMDSLYGCSFCD 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 951520 955535 - Conep13aG0015600.1 Cone13ag0151 450538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0151 344 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0151 344 CDD homeodomain 274 326 IPR001356 GO:0003677(InterPro)
Cone13ag0151 344 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0151 344 SUPERFAMILY Homeodomain-like 263 336 IPR009057 -
Cone13ag0151 344 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677(InterPro)
Cone13ag0151 344 MobiDBLite consensus disorder prediction 24 39 - -
Cone13ag0151 344 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone13ag0151 344 Gene3D - 259 335 - -
Cone13ag0151 344 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0151 344 Pfam ELK domain 242 263 IPR005539 GO:0003677(InterPro)
Cone13ag0151 344 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677(InterPro)
Cone13ag0151 344 SMART ELK_2 242 263 IPR005539 GO:0003677(InterPro)
Cone13ag0151 344 Pfam KNOX1 domain 102 140 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone13ag0151 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 142 332 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag0151 344 SMART HOX_1 264 329 IPR001356 GO:0003677(InterPro)
Cone13ag0151 344 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0151 Cone-Chr13:951520 Cone19ag1044 Cone-Chr19:7712741 2.36E-97 dispersed
Cone13ag0151 Cone-Chr13:951520 Cone13ag1055 Cone-Chr13:8661649 3.81E-96 wgd
Cone13ag0151 Cone-Chr13:951520 Cone19ag0151 Cone-Chr19:836902 3.37E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44574 PF00483 NTP_transferase 2.80E-27 CL0110 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0151 - - - 0.0