Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0151 | ATGGAGGAACTGTACGGTGCACTCCACACCGTCTCCGGTAATCATTACTATTATCGTGACCAGCCTGCTCCATTAACGGCAGTACCACCACCCCCGCCGCCACCCGATCATCTTCCTGATCAAAATAAAAACAGTATCAACCTCATCTTTCCGGCTGTTATCAATAATTATTATGACCATGATGATCGGAATATCCTCTCGTTCGGTTCGACAGGCCGGTCGATTTCGGGTTCGTCCTCTTCAATTAATAATTCAACAGGTGGTCTTCATGATCATGATCTTCGTAACGATGAGTTTTCCAGTGCAATCAGACTCAAAATCGCTTCTCATCCTCTTTACCCTAAACTCCTCCAAGGCTATATCGATTGCCAGAAGGTGGGCGCACCGCCCGAAATAGTGCGTCTGTTGGACGGAGTCCGACCAGGAAGTCATGCTATTTACAAGAGAACCACCGACGACGTCGTTTCGTCTTCCGATCCTGAACTCGACGATTTCATGGAAACGTATTGTGGAATAATGACGAAGTATAAATCGGATCTGGCAAGGTCATTTGATGAAGCTACCTCCTTCCTCAACACCATCGAAACGCAGCTCAAAACGCTTTGCAACGACGTCCCTACAACAAGCTATGTTTCTGATGATGCTGCCGGTCCGTCCGATGATGATCTGAGCGCTGGAGAGATTGATTTACAAGAATGCCCACATCAGACGAATGGAGATCGAGAGTTGAAGGAAAAACTCTTGCGCAAATATAGCGGTTACATTAGTACCTTAAAGCAAGAGTTCTCCAAGAAGAAGAAGAAAGGGAAGCTACCTAAAGATGCAAGGCAAATCCTTCTTGACTGGTGGAATCTTCACTACAAATGGCCTTACCCCACGGAGGGGGACAAAGTTGGGTTGGCTGAATTAACAGGGCTATATCAGAAACAGATAAACAACTGGTTTATAAATCAAAGGAAGAGGCATTGGAAGCCATCTGAAAACATGCAATATGCTGTTATGGACAGTCTTTATGGGTGTTCCTTTTGTGACTAA | 1035 | 45.41 | MEELYGALHTVSGNHYYYRDQPAPLTAVPPPPPPPDHLPDQNKNSINLIFPAVINNYYDHDDRNILSFGSTGRSISGSSSSINNSTGGLHDHDLRNDEFSSAIRLKIASHPLYPKLLQGYIDCQKVGAPPEIVRLLDGVRPGSHAIYKRTTDDVVSSSDPELDDFMETYCGIMTKYKSDLARSFDEATSFLNTIETQLKTLCNDVPTTSYVSDDAAGPSDDDLSAGEIDLQECPHQTNGDRELKEKLLRKYSGYISTLKQEFSKKKKKGKLPKDARQILLDWWNLHYKWPYPTEGDKVGLAELTGLYQKQINNWFINQRKRHWKPSENMQYAVMDSLYGCSFCD | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 951520 | 955535 | - | Conep13aG0015600.1 | Cone13ag0151 | 450538 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0151 | 344 | SMART | KNOX2_2 | 152 | 203 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone13ag0151 | 344 | CDD | homeodomain | 274 | 326 | IPR001356 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | SMART | KNOX1_2 | 101 | 145 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone13ag0151 | 344 | SUPERFAMILY | Homeodomain-like | 263 | 336 | IPR009057 | - | |
Cone13ag0151 | 344 | ProSiteProfiles | 'Homeobox' domain profile. | 262 | 325 | IPR001356 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | MobiDBLite | consensus disorder prediction | 24 | 39 | - | - | |
Cone13ag0151 | 344 | Pfam | Homeobox KN domain | 282 | 321 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cone13ag0151 | 344 | Gene3D | - | 259 | 335 | - | - | |
Cone13ag0151 | 344 | Pfam | KNOX2 domain | 157 | 202 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone13ag0151 | 344 | Pfam | ELK domain | 242 | 263 | IPR005539 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | ProSiteProfiles | ELK domain profile. | 242 | 262 | IPR005539 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | SMART | ELK_2 | 242 | 263 | IPR005539 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | Pfam | KNOX1 domain | 102 | 140 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cone13ag0151 | 344 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 142 | 332 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone13ag0151 | 344 | SMART | HOX_1 | 264 | 329 | IPR001356 | GO:0003677(InterPro) | |
Cone13ag0151 | 344 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0151 | Cone-Chr13:951520 | Cone19ag1044 | Cone-Chr19:7712741 | 2.36E-97 | dispersed | |
Cone13ag0151 | Cone-Chr13:951520 | Cone13ag1055 | Cone-Chr13:8661649 | 3.81E-96 | wgd | |
Cone13ag0151 | Cone-Chr13:951520 | Cone19ag0151 | Cone-Chr19:836902 | 3.37E-213 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44574 | PF00483 | NTP_transferase | 2.80E-27 | CL0110 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0151 | - | - | - | 0.0 |