Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0155 ATGGCGGATCCAGCAATCTCCTCAGCTTCAGCATCTTCGTCGGACCCGAAAGCAAAGAAGGATTTTTCGACTGCCATTCTGGAACGGAAGAAGTCACCTAATCGTCTTATTGTTGATGAGGCTGTAAATGATGACAACTCTGTGGTTTGTATGCATCCTGCTACTATGGAAAAGCTGCAACTTTTTAGGGGAGACACTATTTTACTTAAGGGGAAGAAGAGAAGGGACACAATATGCATTGTTCTTGCTGATGAACAATGTGAAGAGCCAAAAATCCAAATGAATAAAGTGGTTAGAGCCAATCTTAGAGTGCGCCTTGGAGACGTCGTGTCTGTTCATCAGTGCCCTGATGTCAAGTATGGAAAAAGGGTTCACATCCTTCCAATTGATGACACTATAGAGGGGGTCACTGGCAACTTGTTTGATGCATATTTGAAGCCATATTTCCTTGAGTCTTACCGTCCTGTGAGGAAGGGTGACTTCTTTCTAGTAAGAGGTGGGATGCGAAGTGTTGAGTTCAAGGTCATAGAAACCGACCCTGGGGAATACTGTGTTGTCGCACCTGATACAGAAATTTTCTGCGAGGGAGAACCTGTCAAACGTGAAGATGAGGAGAGATTGAATGAAGTCGGATATGATGATGTTGGTGGTGTTAGGAAACAGATGGCTCAGATTCGTGAGCTAGTAGAACTTCCTCTCAGACACCCACAGCTCTTTAAATCAATTGGTGTGAAGCCCCCAAAAGGTATCTTGCTTTATGGGCCTCCCGGATCTGGAAAAACACTTATTGCGAGAGCTGTAGCAAATGAGACAGGTGCATTCTTCTTTCTGATCAATGGGCCAGAAATTATGTCTAAGTTGGCTGGTGAGAGTGAAAGCAACCTGAGAAAGGCATTTGAGGAAGCTGAGAAGAATGCTCCTTCAATCATTTTTATTGATGAGTTAGATTCCATTGCCCCGAAAAGAGAAAAGACACATGGAGAAGTTGAGAGACGTATTGTCTCGCAACTTTTGACTCTGATGGACGGTCTTAAGAGTCGGGCCCACGTGATTGTCATGGGAGCTACAAACAGGCCCAACAGTATTGATCCTGCTTTGAGGAGATTTGGGAGGTTTGACCGAGAAATTGACATTGGTGTACCAGATGAAATCGGGAGACTTGAAGTTCTTAGAATTCACACAAAGAATATGAAACTTTCTGAGGATGTCGATCTTGAGAGAGTTTCAAAAGATACCCATGGTTATGTTGGTGCGGATCTCGCTGCTCTCTGCACAGAGGCTGCTCTCCAGTGTATTCGGGAGAAAATGGATGTGATTGATTTGGAGGATGAAACAATTGATGCTGAGGTTCTGAGTTCCATGGCTGTGACTAATGAGCACTTCCAAACTGCCCTGGGAACTTCTAACCCATCTGCCTTACGTGAAACAGTTGTGGAGGTTCCTAATGTCTCATGGGAAGACATTGGGGGATTGGAAAATGTGAAAAGAGAGCTTCAGGAGACTGTCCAATATCCAGTGGAGCATCCAGAAAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTCTATGGGCCCCCTGGCTGTGGTAAAACTCTTCTTGCAAAGGCAATTGCCAATGAATGCCAGGCCAACTTTATTAGTGTGAAAGGTCCTGAGTTGCTCACAATGTGGTTTGGGGAAAGTGAGGCAAATGTACGGGAGATATTTGACAAGGCTCGCCAATCTGCTCCTTGTGTGCTCTTCTTTGATGAACTCGACTCCATTGCAACCCAGCGAGGCGGCTCTGTAGGAGATGCTGGTGGTGCAGCAGATAGAGTCTTGAATCAACTTCTAACTGAAATGGATGGGATGAATGCTAAGAAAACCGTATTCATAATTGGGGCAACAAACAGGCCCGATATCATTGACCCAGCATTGCTGAGGCCTGGACGTTTAGACCAGTTGATATACATCCCACTACCGGACGAGGCTTCCCGTCATCAGATTTTCAAAGCATGTCTGAGGAAATCACCGATTTCTCAGAATGTTGATCTAGCAGCTCTTGCACGTTACACCCATGGTTTTAGTGGTGCGGATATCACCGAAATCTGTCAGCGTGCTTGCAAATATGCTATCAGAGAAAACATTGAAAAGGATATTGAGAGGGACAGAAAGCAGAAAGAGAACCCGGAAGCAATGGAAGAAGATGAAGTGGATGAGGTGTCAGAAATAAAACCCGCCCACTTTGAGGAGTCCATGAAGTTTGCTCGTAGAAGTGTGAGTGATGCTGATATCAGAAAATACCAGCTCTTTGCTCAGACCTTGCAACAGTCTCGTGGATTCGGGTCTGAATTCCGGTTTGCAGACCGAACTGAGAACACTACTACTGCTGCAGCTGGAGCTACTGATCCGTTTGCTTCTGCAACAGCTGGTGGAGATGATGATGACCTGTACAGCTGA 2448 45.3 MADPAISSASASSSDPKAKKDFSTAILERKKSPNRLIVDEAVNDDNSVVCMHPATMEKLQLFRGDTILLKGKKRRDTICIVLADEQCEEPKIQMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDFFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSEDVDLERVSKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLSSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPISQNVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIERDRKQKENPEAMEEDEVDEVSEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTENTTTAAAGATDPFASATAGGDDDDLYS 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 969837 974434 + Conep13aG0016000.1 Cone13ag0155 450542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0155 815 Pfam Cell division protein 48 (CDC48), domain 2 136 200 IPR004201 -
Cone13ag0155 815 FunFam Cell division control 48 118 214 - -
Cone13ag0155 815 CDD RecA-like_CDC48_r2-like 494 654 - -
Cone13ag0155 815 FunFam Transitional endoplasmic reticulum ATPase 473 656 - -
Cone13ag0155 815 MobiDBLite consensus disorder prediction 791 815 - -
Cone13ag0155 815 SMART CDC48_N_2 35 118 IPR003338 -
Cone13ag0155 815 SMART CDC48_2_2 135 201 IPR004201 -
Cone13ag0155 815 MobiDBLite consensus disorder prediction 1 19 - -
Cone13ag0155 815 CDD RecA-like_CDC48_r1-like 214 379 - -
Cone13ag0155 815 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0155 815 Gene3D - 12 117 - -
Cone13ag0155 815 SUPERFAMILY ADC-like 31 115 IPR009010 -
Cone13ag0155 815 SUPERFAMILY Cdc48 domain 2-like 117 209 IPR029067 -
Cone13ag0155 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 471 IPR027417 -
Cone13ag0155 815 Pfam AAA+ lid domain 678 717 IPR041569 -
Cone13ag0155 815 Pfam AAA+ lid domain 402 443 IPR041569 -
Cone13ag0155 815 Pfam ATPase family associated with various cellular activities (AAA) 250 379 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0155 815 Pfam ATPase family associated with various cellular activities (AAA) 523 656 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0155 815 MobiDBLite consensus disorder prediction 1 21 - -
Cone13ag0155 815 MobiDBLite consensus disorder prediction 717 737 - -
Cone13ag0155 815 FunFam Transitional endoplasmic reticulum ATPase 13 117 - -
Cone13ag0155 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 769 IPR027417 -
Cone13ag0155 815 Gene3D - 660 768 - -
Cone13ag0155 815 Gene3D - 473 656 IPR027417 -
Cone13ag0155 815 Pfam Cell division protein 48 (CDC48), N-terminal domain 35 116 IPR003338 -
Cone13ag0155 815 PANTHER AAA-FAMILY ATPASE 11 768 IPR050168 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016887(PANTHER)|GO:0030433(PANTHER)|GO:0030970(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0051228(PANTHER)|GO:0071712(PANTHER)|GO:0097352(PANTHER)
Cone13ag0155 815 SMART AAA_5 246 382 IPR003593 GO:0016887(InterPro)
Cone13ag0155 815 SMART AAA_5 519 658 IPR003593 GO:0016887(InterPro)
Cone13ag0155 815 NCBIfam CDC48 family AAA ATPase 36 772 IPR005938 GO:0016787(InterPro)
Cone13ag0155 815 Gene3D - 215 379 IPR027417 -
Cone13ag0155 815 FunFam Cell division control 48 381 472 - -
Cone13ag0155 815 ProSitePatterns AAA-protein family signature. 626 644 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0155 815 Gene3D - 381 472 - -
Cone13ag0155 815 Gene3D - 118 214 - -
Cone13ag0155 815 FunFam Transitional endoplasmic reticulum ATPase 211 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0155 K13525 - - rcu:8278919 1510.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0016 Cone-Chr10:139784 Cone13ag0155 Cone-Chr13:969837 3.20E-130 dispersed
Cone10ag0470 Cone-Chr10:2178924 Cone13ag0155 Cone-Chr13:969837 7.82E-123 dispersed
Cone13ag0155 Cone-Chr13:969837 Cone19ag1243 Cone-Chr19:8555047 0 dispersed
Cone6ag1013 Cone-Chr6:5653994 Cone13ag0155 Cone-Chr13:969837 2.76E-45 dispersed
Cone9ag1011 Cone-Chr9:5301615 Cone13ag0155 Cone-Chr13:969837 8.48E-46 dispersed
Cone13ag0155 Cone-Chr13:969837 Cone3ag0265 Cone-Chr3:1383738 0 transposed
Cone13ag0155 Cone-Chr13:969837 Cone10ag0232 Cone-Chr10:1132138 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99