Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0156 ATGGAGCACCAGGCAGAGGACTCTCTACGCACGAGGATGGAGGCAATGCGAATGTCATGCGAGAAGGAGATTTCGATTCAGCAGCAAAAGGTGGAGTCATTTGCCGCTTCGCTTCATCAATCTCTGGAAACAGTCAAGGATAGAGCTCGAGTCAATGCCCAAAATCAAGGAAAGTTTGGAGAGCTTAAAGCCAAGATGAGAGAAGCTGAGGATGATTTGGTCAAAGCTCTAGCAGCAAAGACTCGTAGGGAGGCCAAGCGGATGGCGATAATGGACTCAGTTTCAGATGCAAAAGCTAGAATAGAAAAACTCAGGAGTAGTTTGCAAGACCAGAAAGCTAAGAGGGATGAGTATGCTGCCATAATATCTCAGCAACCATTTGCATTTGAAGAAAACAAAGGAAGAGAAAGTGAATGTATAGGGGAAATACAAGAGGTGATTACCTGGTATAACAGAGTACTCGATCTCCATATAGAAGGAGGACATGGGGTAAAATTCACATTCAAGAATATCAATATAAAAAATCCACTTGAAGAATATTCATTCACCATCCGCCATGCAAATGATACATACACTTTGCTAGAATGTAATCCACCCTTGCATGACATTAAAGAGTTGGTACAGGAGCTGAACAAAACCAATGGTTTATTTAAGTTTGTCAGAGTTGTGAGACAGAAGTTTCAAGAAACTGCATCGCCAGGATTTCTTGCTCAATTGACTACCCTTCATCAAGATACTTTGACGCTCTCTGTGTCAGCTCCAAGTTTGTCAATGTCGACTGACAGAAGTGAGCCTTCAGCCAAAAAAATTGATTGGCAGGTTCAGCATGGAGACCACAATAGACAATCCAAGAAAGCCAACTCTGGGAAGGGTTCTAAATCAACAATACTATCTCCTGGTTCTGCATCATCTCTTCGCCGATCTCCCCGGCATCTGGTCAATAAATGA 948 42.72 MEHQAEDSLRTRMEAMRMSCEKEISIQQQKVESFAASLHQSLETVKDRARVNAQNQGKFGELKAKMREAEDDLVKALAAKTRREAKRMAIMDSVSDAKARIEKLRSSLQDQKAKRDEYAAIISQQPFAFEENKGRESECIGEIQEVITWYNRVLDLHIEGGHGVKFTFKNINIKNPLEEYSFTIRHANDTYTLLECNPPLHDIKELVQELNKTNGLFKFVRVVRQKFQETASPGFLAQLTTLHQDTLTLSVSAPSLSMSTDRSEPSAKKIDWQVQHGDHNRQSKKANSGKGSKSTILSPGSASSLRRSPRHLVNK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 976589 979548 + Conep13aG0016100.1 Cone13ag0156 450543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0156 315 PANTHER KINETOCHORE PROTEIN SPC25-RELATED 4 312 IPR045143 GO:0007059(PANTHER)|GO:0007059(InterPro)|GO:0031262(InterPro)|GO:0031262(PANTHER)
Cone13ag0156 315 Gene3D Chromosome segregation protein Spc25 136 232 - -
Cone13ag0156 315 MobiDBLite consensus disorder prediction 264 285 - -
Cone13ag0156 315 MobiDBLite consensus disorder prediction 255 315 - -
Cone13ag0156 315 Pfam Chromosome segregation protein Spc25 160 228 IPR013255 GO:0007059(InterPro)|GO:0031262(InterPro)
Cone13ag0156 315 FunFam Probable kinetochore protein spc25 136 232 - -
Cone13ag0156 315 Coils Coil 59 79 - -
Cone13ag0156 315 MobiDBLite consensus disorder prediction 287 315 - -
Cone13ag0156 315 Coils Coil 94 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0156 K11550 - - cit:102610388 357.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0156 Cone-Chr13:976589 Cone19ag0155 Cone-Chr19:865325 2.27E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g793 . . . . . Bpe13g00247 Bma06g00213 . . . Cma10g00112 . Car10g00101 . Sed08g0095 . . Bhi02g00491 Tan09g2282 Cmetu02g0582 . Hepe09g0219 . . Cla06g01681 Cam06g1868 Cec06g1917 Cco06g1922 Clacu06g1823 Cmu06g1766 Cre06g2582 . . Cone13ag0156 Cone19ag0155 . . . . . . Bda11g01660 . . . . . . Cmo10g00116 Cmo11g00083 . . . . . Cpe18g00853 . . . . . . . . . . . . . . Lsi06g01572 Csa01g00129 Chy02g02598 Cme02g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008893 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34