Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0160 | ATGGCTTCTTCATCATCATCAGCAATGTCATATACTTCACCCTGTGCCGCCTGCAAATTCCTTCGACGAAAGTGCATGCCAGGCTGCATTTTCGCGCCATACTTCCCGCCAGATGAGCCTCAGAAATTTGCCAACGTCCACAAAATCTTCGGAGCCAGCAACGTGACGAAGCTTCTCAACGACCTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCTCTGGCCTATGAGGCGGAGGCACGTGTCAGGGACCCAGTTTACGGGTGTGTTGGCGCCATCACTTTTCTGCAGAGGCAAGTCCAGAGGCTGGAGAAAGAGCTTGATGATGTTAATGCTGATCTCAACCGCCTTGCTTGCAATGAGATCAACAATCCGACAGTCTACATTACTCAGCCCGTCATGATGATTAACAGGGCAGGTTCGTACACTAATAATGATTACTACAATCAGCAGTTTTCTTCTCTGCCTTGGAATTTTGATCACAATTTTCCAGGACATTCCAATGGAGGAGGAGAAGGGCAAGGGCATAGTTTCTAG | 537 | 49.16 | MASSSSSAMSYTSPCAACKFLRRKCMPGCIFAPYFPPDEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLEKELDDVNADLNRLACNEINNPTVYITQPVMMINRAGSYTNNDYYNQQFSSLPWNFDHNFPGHSNGGGEGQGHSF | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1004955 | 1005491 | + | Conep13aG0016500.1 | Cone13ag0160 | 450547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0160 | 178 | ProSiteProfiles | LOB domain profile. | 13 | 114 | IPR004883 | - | |
Cone13ag0160 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 14 | 110 | IPR004883 | - | |
Cone13ag0160 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 13 | 131 | - | - | |
Cone13ag0160 | 178 | Coils | Coil | 93 | 120 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1358 | Cone-Chr12:10119201 | Cone13ag0160 | Cone-Chr13:1004955 | 9.81E-22 | dispersed | |
Cone13ag0160 | Cone-Chr13:1004955 | Cone1ag0847 | Cone-Chr1:54241388 | 2.24E-53 | dispersed | |
Cone13ag0160 | Cone-Chr13:1004955 | Cone16ag0939 | Cone-Chr16:9541773 | 2.06E-63 | wgd | |
Cone13ag0160 | Cone-Chr13:1004955 | Cone16ag0081 | Cone-Chr16:414323 | 4.23E-74 | wgd | |
Cone13ag0160 | Cone-Chr13:1004955 | Cone19ag0159 | Cone-Chr19:905693 | 6.88E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44575 | PF14009 | DUF4228 | 9.90E-27 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0160 | - | - | - | 0.0 |