Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0160 ATGGCTTCTTCATCATCATCAGCAATGTCATATACTTCACCCTGTGCCGCCTGCAAATTCCTTCGACGAAAGTGCATGCCAGGCTGCATTTTCGCGCCATACTTCCCGCCAGATGAGCCTCAGAAATTTGCCAACGTCCACAAAATCTTCGGAGCCAGCAACGTGACGAAGCTTCTCAACGACCTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCTCTGGCCTATGAGGCGGAGGCACGTGTCAGGGACCCAGTTTACGGGTGTGTTGGCGCCATCACTTTTCTGCAGAGGCAAGTCCAGAGGCTGGAGAAAGAGCTTGATGATGTTAATGCTGATCTCAACCGCCTTGCTTGCAATGAGATCAACAATCCGACAGTCTACATTACTCAGCCCGTCATGATGATTAACAGGGCAGGTTCGTACACTAATAATGATTACTACAATCAGCAGTTTTCTTCTCTGCCTTGGAATTTTGATCACAATTTTCCAGGACATTCCAATGGAGGAGGAGAAGGGCAAGGGCATAGTTTCTAG 537 49.16 MASSSSSAMSYTSPCAACKFLRRKCMPGCIFAPYFPPDEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLEKELDDVNADLNRLACNEINNPTVYITQPVMMINRAGSYTNNDYYNQQFSSLPWNFDHNFPGHSNGGGEGQGHSF 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1004955 1005491 + Conep13aG0016500.1 Cone13ag0160 450547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0160 178 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cone13ag0160 178 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Cone13ag0160 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 131 - -
Cone13ag0160 178 Coils Coil 93 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1358 Cone-Chr12:10119201 Cone13ag0160 Cone-Chr13:1004955 9.81E-22 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone1ag0847 Cone-Chr1:54241388 2.24E-53 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone16ag0939 Cone-Chr16:9541773 2.06E-63 wgd
Cone13ag0160 Cone-Chr13:1004955 Cone16ag0081 Cone-Chr16:414323 4.23E-74 wgd
Cone13ag0160 Cone-Chr13:1004955 Cone19ag0159 Cone-Chr19:905693 6.88E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44575 PF14009 DUF4228 9.90E-27 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0160 - - - 0.0