Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0161 ATGTTCTTTCATTTGCATTTGCTCAAATCTGAGCTCTCCAAGAACTATCAATCTCTACTCAGAACAAAGCAACTGCACGCATTTATCATCAAAACACATCTCTCTCAGGACCCATTTTACGCAACTAGAATTGTAAGATTCTACGCCAATAATGGCGACCTCCATTCTGCTCACCAACTGTTCGACAAGACTCCAAGCCGTAGCGTCTACCTCTGGAACTCCATCATTCGCTCTTACGCCCAATCCTATCAATTCGGTTACGCATTCTCACTCTTCATTAATATGCTCAATACCGAAATCAAACCAGATAACTTCACGTATTCGTGTATAATCCGAGCCTGTTCTGATAGCATTGATAGAGATAAACTAAAAATCATCCATGGACGAGTTATAGTTTCTGGACTTGAATTAGACTACATTTGTTCCAGCACACTTGTATTTGCTTGTTCAAAACTAGGATTTGTTGATAATGCAGCCAAGGTGTTCAATAAAATGCCTGAACCAGATTTGGTGTTGTGGAACTCAATCATTTCGGGTTTTGGGTTTTGTCGGTTATGGTATAAAGGGCTTAAGTTATTTTCTGCAATGAGAAGGTCCGGAAATTGCCCAGATGGATATACAATAGTTGGATTACTGTCAAGTTTAGCTGATTCTAGCTTGTTGGGTTTAGGCAAAGGAATACATGGATTTTGCTTGAAAAGTAATTTCAAGTCAAACGTTCATGTAAGTAGTGTTCTTGTTAGCATGTACTCCAGATGTAATTGTATGGATTCTGCGTATTTAGTCTTTATCGGTTTATCTCAGCCTGATTTAGTAACATGGTCTGCTTTAATAACCGGATATTCTCAATCTGGAGACCATTCTAAAGCACTCACCTTTTTCAAGAAACTGAATAAGGAAGGTTTAAAGGCAGATCCAATTTTGATTTCAAGCATGTTAGCTTCTTCCGCTCAATCAGCAAATTTACAGCCTGGGATTGAAATACATGCTTATGTTCTTAGACATGGGCTTGAATCCGATGTTATGGTTTCATCTTCTCTCATAGACATGTATTCCAAGTGTGGTTTTCTCGGGTTAGGGATATATATTTTCCAGAACATGAAAGAAAAAAATATTGTTTCGTACAATGCTGTAATATCTAGTCTTGGTTTGAACGGACTTGCTCAAAAGGCTTTTGAAATGTTTGATGAAGTATTGAGTAAAGGATTAGTGCCTGATGAGTCTACATTTTCGGGTCTTCTTTGTGCTTGTTGCCATTCCGGACTTGTTCAAAAGGGTAAGGAAATATTCCAAAGAATGAAGAATGAGTATTGTATTGAAACTAAAACGGAACATTGTGTTTATATGGTAAAGCTTTTAGGGAGGGGCGGTGAGTTGGAAGAGGCTTATGATCTTGTCCAGTCCTTGACTGAGCCTGTGGATTGTGGTATATGGGGGGCATTGTTATTTTGTTGTGATAGTTTGGGAAATGCTGAGCTAGCGGAAATTGTGGCGGAGAAGATCTTTGCAAGTAGTCCGGAGAAAAGTGCTTATAAAGTAATGCTTTCGAATGTGTATGCTGGAGAGGGGAGGTGGGACGAGGTGGAGAGGTTAAGGGATGACATGGCAGAACGCGAGGCGGGAAAGATGCCCGGGATTAGCTGGATTGGAGGATGTAGTGTAAGTTGA 1668 39.81 MFFHLHLLKSELSKNYQSLLRTKQLHAFIIKTHLSQDPFYATRIVRFYANNGDLHSAHQLFDKTPSRSVYLWNSIIRSYAQSYQFGYAFSLFINMLNTEIKPDNFTYSCIIRACSDSIDRDKLKIIHGRVIVSGLELDYICSSTLVFACSKLGFVDNAAKVFNKMPEPDLVLWNSIISGFGFCRLWYKGLKLFSAMRRSGNCPDGYTIVGLLSSLADSSLLGLGKGIHGFCLKSNFKSNVHVSSVLVSMYSRCNCMDSAYLVFIGLSQPDLVTWSALITGYSQSGDHSKALTFFKKLNKEGLKADPILISSMLASSAQSANLQPGIEIHAYVLRHGLESDVMVSSSLIDMYSKCGFLGLGIYIFQNMKEKNIVSYNAVISSLGLNGLAQKAFEMFDEVLSKGLVPDESTFSGLLCACCHSGLVQKGKEIFQRMKNEYCIETKTEHCVYMVKLLGRGGELEEAYDLVQSLTEPVDCGIWGALLFCCDSLGNAELAEIVAEKIFASSPEKSAYKVMLSNVYAGEGRWDEVERLRDDMAEREAGKMPGISWIGGCSVS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1010061 1014362 - Conep13aG0016600.1 Cone13ag0161 450548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0161 555 Gene3D Tetratricopeptide repeat domain 221 320 IPR011990 GO:0005515(InterPro)
Cone13ag0161 555 FunFam Pentatricopeptide repeat-containing protein 226 329 - -
Cone13ag0161 555 Pfam PPR repeat family 370 419 IPR002885 -
Cone13ag0161 555 Pfam PPR repeat family 68 115 IPR002885 -
Cone13ag0161 555 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 342 553 - -
Cone13ag0161 555 Gene3D Tetratricopeptide repeat domain 422 547 IPR011990 GO:0005515(InterPro)
Cone13ag0161 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cone13ag0161 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cone13ag0161 555 Pfam E motif 490 549 IPR046848 -
Cone13ag0161 555 PANTHER OS07G0578800 PROTEIN-RELATED 15 117 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone13ag0161 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Cone13ag0161 555 Gene3D Tetratricopeptide repeat domain 128 220 IPR011990 GO:0005515(InterPro)
Cone13ag0161 555 Gene3D Tetratricopeptide repeat domain 321 421 IPR011990 GO:0005515(InterPro)
Cone13ag0161 555 Gene3D Tetratricopeptide repeat domain 6 127 IPR011990 GO:0005515(InterPro)
Cone13ag0161 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cone13ag0161 555 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Cone13ag0161 555 NCBIfam pentatricopeptide repeat 70 103 IPR002885 -
Cone13ag0161 555 NCBIfam pentatricopeptide repeat 409 435 IPR002885 -
Cone13ag0161 555 NCBIfam pentatricopeptide repeat 373 407 IPR002885 -
Cone13ag0161 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Cone13ag0161 555 Pfam PPR repeat 272 302 IPR002885 -
Cone13ag0161 555 Pfam PPR repeat 171 200 IPR002885 -
Cone13ag0161 555 Pfam PPR repeat 143 167 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0161 Cone-Chr13:1010061 Cone11ag0583 Cone-Chr11:3404106 4.08E-101 dispersed
Cone11ag0096 Cone-Chr11:409509 Cone13ag0161 Cone-Chr13:1010061 2.40E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21