Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0167 ATGGATCCGAACCCTAAAAGCTTCCCTATGCTCTCCTACGTCATGAAACGAATCCCTGCCATCGGGCCTCACTTTGGCGCCTCCACAACGGCCGATTCCTCCTCCGGTCCGATCGAAATCGACATCGAACAGCCTTCCACTCTGCCGCCACCAGCACAGCCGCCTCCCGATCCTTCCTGGTACTCGTCCGATCAAATCTCCGACCACATGCGGCATCTAACGAATCCGAAAGTCCTTGAGGCTATGACGCGCGCCGTAGGCGACGTGGCTCAGACCCGATCCGTACTCAAAACTCTCGGTGAGCGACCTGATCATGAGACTGTAGACGCGGCGAAAGCAAGGCTCTCTGACATCGAACACAACCTGTCCAAGCAGCTCGAGGAAATCGTTCTCTCTCCTCGTCCGGCTGATATTGAGCGCCTTGAGTATCGAGCTCACCAGGCGGAGAAGGAGACAGATGTACGGAAATCTGCGGAGAGAGAGAAGCAGGTGTGTAAGGCTGTGCTTCAATTGGATGAAATGCACGACGCGTATGAGAAGTTGTTGAGGCAAGCGGAGGAGAGGCTTGTGAAGATTTACAAGTCGGCCGAAGCAGGTGAGGAGCAGGTTTTGGAGGAGGAAGGGGAGGGGGAGAAAGTGGTTGTGAAGGAGGAGATTAATGAGGAAGTGGTGGGGATTCTTCATGAGGCTAATGGGAAAGCTCTGGAGCGGGTGGATCTTTCTGGCCGGCAGCTTCGGTTTCTACCGGAAGCATTTGGCCGGATGTCTGGATTGGTCGTCCTCAATCTTTCAAGCAATCAGCTTCAGGTCATTCCTGACTCCATAGCCGGTTTAGAAAAAATTGAGGAGCTGAATGCATCTTCTAATCTGTTGGAGTCACTTCCAGACTCGATTGGCCTGTTGCAAAAGCTCAAACTCTTGAACGTCTCCGGGAACAAGCTAAAAGCCCTTCCCGACTCCATATGCAGTTGCAGGTCACTAGTGGAGTTGGATGTGAGCTTCAATGATCTCACATACTTGCCAACAAACCTCGGCTATGAGTTAGTCGACTTACAAAAGCTATCGATTCAACTAAACAAGCTCCGGTCCATTCCCTCTTCTGTCTGTGAAATGAGATCTCTCCGCTTCTTAGATGCTCACTTCAACGAAATTAGAGGCCTTCCCCTTGCCATAGGGAAACTAATAAACCTAGAATATCTCAACCTAAGCAGTAACTTTAGTGACTTAAAAGAACTCCCAGATACTTTTGGAGACTTAACCAACCTGCAAGAACTCGATCTGAGCAACAACCAAATCCGGGCCCTACCCGATACTTTTGGGCGTCTAGACAATTTGAAGAAACTCAACTTAGAACAGAACCCGATTTTTATTCCACCTCCAGAAGTTGTTAATGACGGAGTGGAAGCTGTTAAGATCTTCATGGCAAAGAGATGGCTCGAGATTCTGGTTGAAGAAGAGAGGAAGAGCATGGTTGAAGTACAAGAACAGAACCAGCAGAAGGGTTGGTTGACTAGAAGCACTTCTTGGTTGAAGACTTATGCTTCGGGTGTTTCTGGAAGCGTTGCAGAATATATTGGTAGTCCTAGGACTCCTAGGGACCCGTATCTTGATCAGCAGCTATGA 1623 49.48 MDPNPKSFPMLSYVMKRIPAIGPHFGASTTADSSSGPIEIDIEQPSTLPPPAQPPPDPSWYSSDQISDHMRHLTNPKVLEAMTRAVGDVAQTRSVLKTLGERPDHETVDAAKARLSDIEHNLSKQLEEIVLSPRPADIERLEYRAHQAEKETDVRKSAEREKQVCKAVLQLDEMHDAYEKLLRQAEERLVKIYKSAEAGEEQVLEEEGEGEKVVVKEEINEEVVGILHEANGKALERVDLSGRQLRFLPEAFGRMSGLVVLNLSSNQLQVIPDSIAGLEKIEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLKALPDSICSCRSLVELDVSFNDLTYLPTNLGYELVDLQKLSIQLNKLRSIPSSVCEMRSLRFLDAHFNEIRGLPLAIGKLINLEYLNLSSNFSDLKELPDTFGDLTNLQELDLSNNQIRALPDTFGRLDNLKKLNLEQNPIFIPPPEVVNDGVEAVKIFMAKRWLEILVEEERKSMVEVQEQNQQKGWLTRSTSWLKTYASGVSGSVAEYIGSPRTPRDPYLDQQL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1042578 1045746 + Conep13aG0017200.1 Cone13ag0167 450554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0167 540 ProSiteProfiles Leucine-rich repeat profile. 280 301 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 MobiDBLite consensus disorder prediction 27 41 - -
Cone13ag0167 540 Coils Coil 168 202 - -
Cone13ag0167 540 SUPERFAMILY L domain-like 230 460 - -
Cone13ag0167 540 Pfam Leucine Rich Repeat 303 324 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 Gene3D Ribonuclease Inhibitor 112 347 IPR032675 -
Cone13ag0167 540 SMART LRR_typ_2 301 324 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 419 441 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 255 277 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 442 465 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 278 300 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 348 371 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 325 347 IPR003591 -
Cone13ag0167 540 SMART LRR_typ_2 394 418 IPR003591 -
Cone13ag0167 540 Coils Coil 108 128 - -
Cone13ag0167 540 ProSiteProfiles Leucine-rich repeat profile. 421 442 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 PANTHER LEUCINE-RICH REPEAT-CONTAINING 114 388 IPR050715 GO:0004674(PANTHER)|GO:0007165(PANTHER)
Cone13ag0167 540 FunFam Plant intracellular Ras-group-related LRR protein 9 150 339 - -
Cone13ag0167 540 SMART LRR_bac_2 301 320 - -
Cone13ag0167 540 SMART LRR_bac_2 255 274 - -
Cone13ag0167 540 SMART LRR_bac_2 324 343 - -
Cone13ag0167 540 SMART LRR_bac_2 419 438 - -
Cone13ag0167 540 SMART LRR_bac_2 348 367 - -
Cone13ag0167 540 SMART LRR_bac_2 278 297 - -
Cone13ag0167 540 SMART LRR_bac_2 394 415 - -
Cone13ag0167 540 FunFam Plant intracellular Ras-group-related LRR protein 2 343 517 - -
Cone13ag0167 540 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 Pfam Leucine rich repeat 235 291 IPR001611 GO:0005515(InterPro)
Cone13ag0167 540 MobiDBLite consensus disorder prediction 22 64 - -
Cone13ag0167 540 Gene3D Ribonuclease Inhibitor 348 515 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0167 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0167 Cone-Chr13:1042578 Cone19ag0164 Cone-Chr19:936595 2.00E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37