Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0168 ATGGATTCCACTATGGTGATCAAGGTTAAATATGGAGAAACTCTAAGGCGCTTCAATTCTCCTATTACTGAGAATGGTCTACTTGACCTTAACATGGATGGATTGCGGGGGAAAATCATTCTCCTCTTTGGATTTCCCACGGACGCGGATCTTACTTTGACATACATTGATGAAGATGGTGATGTGGTGACACTAGTTGAAGATGGTGATCTACGTGATGTGATGAGGCAGAATCTGAAATTCTTGAGGATTAATGTGCAGCTGAGTACCAACATCAGTGGTAATGCCTCTGCTAGATCTACCAGGAGTTCGACCCCCTTATTATCTCCTCGAGGCATGCACCCACTTTCAAATATCAATTCAGGTGTTGCTGAGGTTTTGAAATCTGTGCCTGAGCCCTTACGTGACACACTTTCAAAGCTCTCTCTTGACTTGGCTTCTAAAGCTGTATCCTCTGGTCCAGTATTATCTGAGCTGATCGAGTCCTTCAATAAGTTGGGAGTGTCGTTACTGAATAAGAACGCCCAGTCTTCAGTCAGTGTAAATTTAGGTGCGGAAAATGGAGCTTCTAAGAGTAGTGCTGCTGGTATAGTTTCTGAGGGCTCAAAGTCTTTAGGAAATGATGATCTTCCAGAAGGGCCAGTGAATTCTTCTAGCTCAAAGAAGGTTGAAGGTGGGACTGTGACCAGAGGTATGGGCGCCCCAGTTGTTCCTGCCCCAACTTCTTTTGATCTTAATCTGCCGCTTACTGGTGAGGAGAGGAAGGAGAACCCAGAGCCAAGTGGTGATTTTCTTATGAAGAATGTCAGCCAAGAATCTTCACAAGACGCTGACCCGAATGATAACCCTTTTGATGACTGTCCATTTACTGGGTTACCTCTCACAAGTGATTCAACTCCTCGTTCACTTGCACCTCGCCGTGTCCATCCTTTCAAAAGAGGCTATAATCAAGCCGAATCTTTTACTGGAATGTTCCACAGAGGTGTTATCTGTGATGGCTGTGGAGTGCATCCCATAACTGGACCTCGGTTCAAGTCAAAAGTGAAAGAAGATTATGATCTCTGTAGTTTCTGCTTTGTGAAAATGGGTGATGAAGCCGATTACATTAGAATGGACCGTCCACTCTCTCACCGTCACCCGCACCCGCGCTGTTTCCGCCTCCCACATGACCAATTACCATGGACAGGTCCCCTCGCAAGACCACATGATATGAGAGGCTGTGGAGCAAAGTGTAATCCACATACATTTAACAGCTGCTTTATTTCAGATGTCAATGTCTTAGATGGGACAGTAATGTCTCCATCCACTCACTTCACTAAGATATGGCGTATGCATAACAATGGAACTGTGGTATGGCCTCACGGGACACAAATTCAGTGGATTGCTGGACATAAGTTTAGTGATGCACTTTCACTTTCGATAGAGATCCCTTCCGATGGTGTTGCTGTGAATAAGGAAATTGATATTGCTGTTGATTTCACAGCACCTGAATTGCCTGGTAAATATGTTTCATACTGGCGGTTAGCAACTCCGGCTGGCCACAAATTTGGTCAACGTGTTTGGGTTGTTATCCAGGTCGATGCCTCATCGCCAAGAGATTCTCTTTTAGGGAGTTTCAATGTCCCAAACCTGAACCTACCTGCCCAGAGCAGCAGCAGCAGCAGTAGAAGGTCTAATGCAGGCTTAGATGCTATTGACATGAATGCCATACCAGCTCCAGATGGTGACTTTCTTCAACCTCCCAACTCCAATATAAGCCCAAATCCTGTAAACCCAGTGAGTGAACAATACCCTGAAAATGAACAGGACTTGCATTTTCCTCTTACCGACAGCTTACTGGTCGGTCAAAGTCTTGCACCCCCTTCTCTTTCCAAGTTCTCTCCTGCTATCTCCTACCCCATCATTGACAACCATCTCACTCGGGCCCAACCAGTCCAACCAGCCCAACTGGCCCAACCAGTCCAACCTGCCCATATTCCCTCCGTCTCTTATCCCATCATTGATTTCTCCGATATGGCCCCATCAACCCCATTGCCTGTCCCACCGATCCTTGCCCCGTCTGCCCCCTCCCCGTCTACGTTGCCACCTTCTTTGGATGCACTAGCATCTGCAAAGCATGCCATGGAGGAGAAGCTTCTTACAGAACTAGAAGAAATGGGGTTTAAGCAAGTTGATTTGAACAAAGAGATTCTTCGATTAAACGAGTATGATCTCGAGCAGTCAGTGGATGATCTTTGTGGAGTCTCTGAATGGGATCCCATCCTTGAGGAGTTAAAGGAAATGGGCTTTTTGGATAAAGAAACGAACAAGAAGCTGCTGGCCAAAAATAATGGAAGCATTAAGCGTGTGGTTATGGACCTTATTTCTGGGGAGAAGGCTTAA 2382 45.97 MDSTMVIKVKYGETLRRFNSPITENGLLDLNMDGLRGKIILLFGFPTDADLTLTYIDEDGDVVTLVEDGDLRDVMRQNLKFLRINVQLSTNISGNASARSTRSSTPLLSPRGMHPLSNINSGVAEVLKSVPEPLRDTLSKLSLDLASKAVSSGPVLSELIESFNKLGVSLLNKNAQSSVSVNLGAENGASKSSAAGIVSEGSKSLGNDDLPEGPVNSSSSKKVEGGTVTRGMGAPVVPAPTSFDLNLPLTGEERKENPEPSGDFLMKNVSQESSQDADPNDNPFDDCPFTGLPLTSDSTPRSLAPRRVHPFKRGYNQAESFTGMFHRGVICDGCGVHPITGPRFKSKVKEDYDLCSFCFVKMGDEADYIRMDRPLSHRHPHPRCFRLPHDQLPWTGPLARPHDMRGCGAKCNPHTFNSCFISDVNVLDGTVMSPSTHFTKIWRMHNNGTVVWPHGTQIQWIAGHKFSDALSLSIEIPSDGVAVNKEIDIAVDFTAPELPGKYVSYWRLATPAGHKFGQRVWVVIQVDASSPRDSLLGSFNVPNLNLPAQSSSSSSRRSNAGLDAIDMNAIPAPDGDFLQPPNSNISPNPVNPVSEQYPENEQDLHFPLTDSLLVGQSLAPPSLSKFSPAISYPIIDNHLTRAQPVQPAQLAQPVQPAHIPSVSYPIIDFSDMAPSTPLPVPPILAPSAPSPSTLPPSLDALASAKHAMEEKLLTELEEMGFKQVDLNKEILRLNEYDLEQSVDDLCGVSEWDPILEELKEMGFLDKETNKKLLAKNNGSIKRVVMDLISGEKA 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1048392 1052644 + Conep13aG0017300.1 Cone13ag0168 450555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0168 793 Gene3D - 702 749 - -
Cone13ag0168 793 Gene3D - 750 791 - -
Cone13ag0168 793 Gene3D Immunoglobulins 412 530 IPR013783 -
Cone13ag0168 793 SUPERFAMILY RING/U-box 322 392 - -
Cone13ag0168 793 SMART zz_5 325 367 IPR000433 GO:0008270(InterPro)
Cone13ag0168 793 Pfam PB1 domain 5 87 IPR000270 GO:0005515(InterPro)
Cone13ag0168 793 MobiDBLite consensus disorder prediction 189 305 - -
Cone13ag0168 793 Gene3D - 320 384 IPR043145 -
Cone13ag0168 793 MobiDBLite consensus disorder prediction 264 280 - -
Cone13ag0168 793 CDD NBR1_like 416 527 IPR032350 -
Cone13ag0168 793 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 707 745 IPR015940 -
Cone13ag0168 793 FunFam protein NBR1 homolog 750 791 - -
Cone13ag0168 793 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 741 790 IPR015940 -
Cone13ag0168 793 Pfam Ig-like domain from next to BRCA1 gene 425 526 IPR032350 -
Cone13ag0168 793 CDD UBA_NBR1 750 788 - -
Cone13ag0168 793 SMART PB1_new 4 89 IPR000270 GO:0005515(InterPro)
Cone13ag0168 793 Gene3D - 1 88 - -
Cone13ag0168 793 ProSiteProfiles PB1 domain profile. 4 89 IPR053793 -
Cone13ag0168 793 FunFam next to BRCA1 gene 1 protein-like 411 531 - -
Cone13ag0168 793 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 4 790 - -
Cone13ag0168 793 ProSiteProfiles Zinc finger ZZ-type profile. 326 376 IPR000433 GO:0008270(InterPro)
Cone13ag0168 793 SUPERFAMILY CAD & PB1 domains 3 86 - -
Cone13ag0168 793 Pfam Zinc finger, ZZ type 326 361 IPR000433 GO:0008270(InterPro)
Cone13ag0168 793 MobiDBLite consensus disorder prediction 570 592 - -
Cone13ag0168 793 MobiDBLite consensus disorder prediction 211 225 - -
Cone13ag0168 793 SUPERFAMILY UBA-like 751 788 IPR009060 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0168 K17987 - - cit:102622663 694.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0168 Cone-Chr13:1048392 Cone19ag0165 Cone-Chr19:949314 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41