Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0185 ATGGGTGGGTTAGTTTCGAAACGGGAAAGCCCGAGATATGCTTCATATGGTTCTTCTACCCCTATCCCTAGCCCATATCAGTGGGGCCCACCAGACGGTTATCCGCAGACAACATATGGTCAACAGAATTTTGCTGCTCCGCCGGGTGGCTATAGTGGAGGCCAGAGCCATCAAGCCACTGAGTCAAGAAGGAAGTTAGAAAGGAAGTATTCAAAGATAGCTGATAATTACAATAGTCTTGAGCAGGTCACCGATGCACTGGCACGAGCTGGTTTGGAGTCCTCTAATCTTATTGTTGGCATTGATTTCACTAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCATCGGAAAAGCTTGCATCACATTGGAGATGGACAGAATCCCTATGAACAAGCAATCTCCATTATCGGGAAGACATTGTCTTCATTTGATGAAGATAACTTGATTCCTTGTTTCGGATTCGGAGATGCATCAACCCATGACCAAGAAGTTTTTAGCTTCCATTCGGATGAAAGATTTTGCAACGGATTTGAAGAAGTATTGAGTCGATATAGAGAACTGGTCCCACATTTACGACTTGCAGGTCCAACATCTTTTGCTCCGGTCATCGAAATGGCTATCACAATTGTCGAGCAAAATGGTGGCCAATATCATGTATTGGTGATAATAGCAGATGGGCAGGTGACTAGGAGTGTTGATACTAATCATGGTCAGTTAAGTCCACAAGAAAAGAAGACAGTTGAAGCAATTGTGAAAGCGAGTGAGTACCCCTTGTCAATTATACTAGTTGGGGTTGGAGACGGGCCTTGGGACATGATGAGGGAGTTTGATGACAACATCCCGGCCCGAGCCTTTGATAACTTTCAGTTTGTGAACTTTACAGAGATTATGTCAAAAAATATGGACCGGTCTAGAAAAGATGCAGAATTTGCTCTGGCGTCATTAATGGAAATACCCTCTCAATATAAAGCAACACTGGAGCTCAATCTATTGGGTACTAGTAGAGGGAAGGCAATAGACCGGGTTCCACTTCCACCGCCTCGCTATGGTGCTGCAACCTTTGTCTCCTCAAAGCCTTCGGTTACAAGTAACTCTCGGCCCAGTGCACCTCCTTCAGTTAGAAATACGGCTGCTCACACTACTGTCCCCACAAGTTCCACCTCCGATGCTCATCTGTGTCCCATTTGCATTACGGATGCTAAGGATATGGCTTTTGGTTGTGGACACCAGACATGCTGTGAATGCGGACAAGATCTTCAGTTATGTCCCATATGCCGGAGTATAATCCAGACAAGGATAAAACTTTATTAA 1314 44.9 MGGLVSKRESPRYASYGSSTPIPSPYQWGPPDGYPQTTYGQQNFAAPPGGYSGGQSHQATESRRKLERKYSKIADNYNSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFHRKSLHHIGDGQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFHSDERFCNGFEEVLSRYRELVPHLRLAGPTSFAPVIEMAITIVEQNGGQYHVLVIIADGQVTRSVDTNHGQLSPQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKDAEFALASLMEIPSQYKATLELNLLGTSRGKAIDRVPLPPPRYGAATFVSSKPSVTSNSRPSAPPSVRNTAAHTTVPTSSTSDAHLCPICITDAKDMAFGCGHQTCCECGQDLQLCPICRSIIQTRIKLY 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1149657 1153558 + Conep13aG0019000.1 Cone13ag0185 450572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0185 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 437 IPR013083 -
Cone13ag0185 437 PANTHER COPINE FAMILY PROTEIN 1 54 437 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cone13ag0185 437 MobiDBLite consensus disorder prediction 356 389 - -
Cone13ag0185 437 ProSiteProfiles Zinc finger RING-type profile. 394 427 IPR001841 -
Cone13ag0185 437 Pfam Copine 119 332 IPR010734 -
Cone13ag0185 437 SUPERFAMILY vWA-like 95 278 IPR036465 -
Cone13ag0185 437 Coils Coil 63 83 - -
Cone13ag0185 437 Gene3D von Willebrand factor, type A domain 68 308 IPR036465 -
Cone13ag0185 437 SMART VWA_4 94 297 IPR002035 -
Cone13ag0185 437 MobiDBLite consensus disorder prediction 1 62 - -
Cone13ag0185 437 SUPERFAMILY RING/U-box 390 433 - -
Cone13ag0185 437 MobiDBLite consensus disorder prediction 34 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0185 K16280 - - rcu:8278256 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0185 Cone-Chr13:1149657 Cone18ag1382 Cone-Chr18:9474897 1.69E-205 dispersed
Cone3ag1515 Cone-Chr3:33681382 Cone13ag0185 Cone-Chr13:1149657 1.81E-157 transposed
Cone11ag0092 Cone-Chr11:391286 Cone13ag0185 Cone-Chr13:1149657 4.42E-202 wgd
Cone13ag0185 Cone-Chr13:1149657 Cone13ag1094 Cone-Chr13:8851639 3.87E-177 wgd
Cone13ag0185 Cone-Chr13:1149657 Cone19ag0178 Cone-Chr19:1134351 1.06E-295 wgd
Cone13ag0185 Cone-Chr13:1149657 Cone19ag0250 Cone-Chr19:1644555 4.58E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136