Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0186 ATGGCAGATCATAACAAGCACATTCTCTGGGTTTCTCAAGCTCTAAAGACAACGATTGTTTTGCTACATTGTATTGGTTGTACTTTCGGGCAAGGCCCCCCTCGTGCCTTGAAAGGGAATCACGGACATTGGGAAACTACCCTGAACAACACAGGGGTTGTAGCCACCCACATGGCCTTAACCCATCACAACACTGTCGTCATGTTCGATCAAACAAGAGCTGGACCATCCCGTTATCGGCTCAGTCGACGACACGACGGGAGCCGATGTACCAGGTCCAACCATGATTTGGCTGATTGGTCATGCTACGCGCACTCAGTCGAATTTGACATTGATGCTAATGAAATTAGGCCACTATGGCTTTATACGGATCCTTGGTGCTCCTCAGGTTCGTTCTTAAGCAACGGAACGTTATTACAAACCGGTGGACATGGAAGTGGGACTCGGAGAGTTCGAGTTTTCAGGCCCTGTGAGAATCATCAATGTGATTGGACGGAAACAAGGAGATCTTTATCGGATGATAGATGGTATGCTTCGAATCAGATACTCCCAGGTCATGATAGGGTTATTGTTGTTGGTGGAAGAAGGACATTCACTTATGAGTTTGTACCGAAATTGGGGACAGAAAAATCTTTTCATCTTCCATTTTTGAGCAGGGCTTATGATGGAAATGAAGGCGGAAACACCTGCTATCCCTTCCTACACCTTTCTTCCGATGGACACTTGTTCATTTTCGCTAACAGAGACTCTATCCTATTCAATTACCGACGAAATCATGTTGTCAAGACCTACCCTCGAATGCCTGGACGCGGGTCAAGAAATTACCCAAGCTCCGGCTCATCAGTAATCCTACCTCTAGATCATAAAGATCACTTTCGAAAAGTTGAAGTTATGGTTTGTGGAGGTTCTTCATCAAGGGCTTACAATGCCGCACAAAACGGTACATTCTTGCAAGGTTTGAGGTCTTGTGGAAGAATGGTAATTACAGGAAACCAACACAAATGGAATATGGAGTACATGCCAGGTCCCCGTCTCTTACACGACATGTTAATCCTTCCGACCGGACACATCTTGATAATCAACGGGGCCAAATCCGGCTTAGGTGGAACGAACAATGCAAGACATCCTTCTCGCCAACCTTACCTTTACAAACCGAAAAAAATACTTGGAAGAAGATTTTCAATCCTTAGGTCAACCAAAATAGCAAGAATGGATCATTCTTCTGCCGTTCTCCTTCCAAATGGCAAAATCCTAGTGGCCGGTGGAAATCCGAATAATAGGTACGCTTTCACGAGAGTTTCTTACCCAACTGAGCTTAGGCTCCAAACATTTGTTCCACACTATATGGAGTCAAGATACCATCGTTTGAGGCCTGTTAATGTAACCGTACACTACGGTCCCAATCAATATGGGGCCCGCTATGGGCAAGAGTTTGGTGTTCGGTTCCGTTTAGGCAGAAGGTCACATGAGTCGGTTGATTTCAGTGCTTATTCGCCGCCTTTTACAACGCATTCAATCTCGATGAATCAGAGGATGTTGAAGTTAAGGTGCAGGAGCATGACTAGAGACAAGACGGGTGATTGGGTGCATGCAATCGTGGAGGCTCCTCCATCTCCTAATGTTGCGCCTTCCGGTTATTACATGCTCACTGTTGTGAATGGGGGGATTCCTAGCTTTTCAAAGTGGGTTAGATTCATACATGCTCAAGTTAATTAA 1716 45.4 MADHNKHILWVSQALKTTIVLLHCIGCTFGQGPPRALKGNHGHWETTLNNTGVVATHMALTHHNTVVMFDQTRAGPSRYRLSRRHDGSRCTRSNHDLADWSCYAHSVEFDIDANEIRPLWLYTDPWCSSGSFLSNGTLLQTGGHGSGTRRVRVFRPCENHQCDWTETRRSLSDDRWYASNQILPGHDRVIVVGGRRTFTYEFVPKLGTEKSFHLPFLSRAYDGNEGGNTCYPFLHLSSDGHLFIFANRDSILFNYRRNHVVKTYPRMPGRGSRNYPSSGSSVILPLDHKDHFRKVEVMVCGGSSSRAYNAAQNGTFLQGLRSCGRMVITGNQHKWNMEYMPGPRLLHDMLILPTGHILIINGAKSGLGGTNNARHPSRQPYLYKPKKILGRRFSILRSTKIARMDHSSAVLLPNGKILVAGGNPNNRYAFTRVSYPTELRLQTFVPHYMESRYHRLRPVNVTVHYGPNQYGARYGQEFGVRFRLGRRSHESVDFSAYSPPFTTHSISMNQRMLKLRCRSMTRDKTGDWVHAIVEAPPSPNVAPSGYYMLTVVNGGIPSFSKWVRFIHAQVN 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1153997 1155869 + Conep13aG0019100.1 Cone13ag0186 450573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0186 571 SUPERFAMILY Galactose oxidase, central domain 106 450 IPR011043 -
Cone13ag0186 571 SUPERFAMILY E set domains 453 564 IPR014756 -
Cone13ag0186 571 PANTHER SECRETED PROTEIN-RELATED 33 565 - -
Cone13ag0186 571 CDD E_set_GO_C 453 564 IPR015202 -
Cone13ag0186 571 Pfam Glyoxal oxidase N-terminus 57 302 IPR009880 -
Cone13ag0186 571 Pfam Galactose oxidase-like, Early set domain 469 564 IPR015202 -
Cone13ag0186 571 Gene3D - 38 453 IPR037293 -
Cone13ag0186 571 Gene3D Immunoglobulins 457 570 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0186 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0186 Cone-Chr13:1153997 Cone6ag0612 Cone-Chr6:3027274 1.37E-161 dispersed
Cone19ag0180 Cone-Chr19:1140134 Cone13ag0186 Cone-Chr13:1153997 6.11E-69 transposed
Cone13ag0186 Cone-Chr13:1153997 Cone19ag0179 Cone-Chr19:1139000 7.95E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013273 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 0 27