Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0188 ATGTCTTCTTCTTCTTCAGCCACTTCTCTTTTCAAGCCTATGGCGGAGTCTTGCGTACTCTCCTCCTCTTCGCCTTCTCTCTTCACCGCCAAAACTCCATACCCTTTCCTCTCTTTCCCATCAAAAGTCATCAGACTCCATCTCTCTTCAGCCTTCTCTCTCCCATCTCTCTCTCTCAAGAAGAAGAAGAACATAGCCCACTCTCCTTCTTCTTCCATAATCACTCTCGTTGCTCAGACCTCGGATTGGGCTCAACAAGAAGATAACACACTCACCATTGACAGAGAAGAAGAACCCAGCTGGGAAGCTGAAGGAGAGGATTCCGTGGCCGCTTCGAATGAAGGTGGAGAGGAAGAGGAAGGGTATTATGCTGAACCACCTGAAGATGCGAAATTATTTGTTGGGAATTTGCCTTACGATATTGATAGTGACAAATTGGCTCAGATCTTCGAGAAGGCCGGAACTGTTGAGATTGCTGAAGTCATTTACAATAGAGAGACTGATCAAAGTCGTGGGTTTGGATTTGTGACATTGAGCACTGTTGAAGAGGCTGAGAAAGCTGTGGATATATTCAGTCGATATGAATTGAATGGGAGGCAACTTACGGTTAACAAGGCGGCTCCGAGAGGAGCTAGAGAAGAACGCCCGCCCCGTGTATTTGAGCCAGCTTTTAGAATCTATGTAGGAAATCTTCCGTGGAATGTGGACAATTCTCAGCTCGAGCAAGTCTTTAGCGAGCATGGTAAGGTGGTTGATGCTCGAGTTGTCTTTGATCGGGAGACTGGCCGTTCTCGTGGTTTTGGATTTGTAACAATGGCTGATGAGACCGAAATGAATGATGCCATTGCTGCTCTTGATGGACAGAGTTTGGATGGGAGAGCTATAAGAGTAAATGTTGCCGAGGAAAGGCCAATGCGCAGATCCTTTTGA 930 46.56 MSSSSSATSLFKPMAESCVLSSSSPSLFTAKTPYPFLSFPSKVIRLHLSSAFSLPSLSLKKKKNIAHSPSSSIITLVAQTSDWAQQEDNTLTIDREEEPSWEAEGEDSVAASNEGGEEEEGYYAEPPEDAKLFVGNLPYDIDSDKLAQIFEKAGTVEIAEVIYNRETDQSRGFGFVTLSTVEEAEKAVDIFSRYELNGRQLTVNKAAPRGAREERPPRVFEPAFRIYVGNLPWNVDNSQLEQVFSEHGKVVDARVVFDRETGRSRGFGFVTMADETEMNDAIAALDGQSLDGRAIRVNVAEERPMRRSF 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1168381 1170461 + Conep13aG0019300.1 Cone13ag0188 450575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0188 309 Gene3D - 77 213 IPR012677 -
Cone13ag0188 309 Gene3D - 214 309 IPR012677 -
Cone13ag0188 309 MobiDBLite consensus disorder prediction 92 125 - -
Cone13ag0188 309 SUPERFAMILY RNA-binding domain, RBD 126 217 IPR035979 GO:0003676(InterPro)
Cone13ag0188 309 Pfam RNA recognition motif 226 296 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 Pfam RNA recognition motif 132 201 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 SUPERFAMILY RNA-binding domain, RBD 217 306 IPR035979 GO:0003676(InterPro)
Cone13ag0188 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 CDD RRM2_NsCP33_like 225 300 IPR048289 -
Cone13ag0188 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 302 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 SMART rrm1_1 131 204 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 SMART rrm1_1 225 298 IPR000504 GO:0003723(InterPro)
Cone13ag0188 309 PANTHER OS02G0815200 PROTEIN 52 306 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cone13ag0188 309 FunFam 31 kDa ribonucleoprotein, chloroplastic 214 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0188 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0188 Cone-Chr13:1168381 Cone3ag0277 Cone-Chr3:1435281 2.07E-55 dispersed
Cone6ag1399 Cone-Chr6:11255593 Cone13ag0188 Cone-Chr13:1168381 5.93E-13 dispersed
Cone13ag0188 Cone-Chr13:1168381 Cone16ag0958 Cone-Chr16:9628515 3.24E-115 wgd
Cone13ag0188 Cone-Chr13:1168381 Cone2ag0080 Cone-Chr2:362057 2.43E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35