Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0192 ATGGCCCCACTACATTCCTCTTCTCTCTCTCTCTCACTCATCTTCCTCTTTTCTCTCCTCACCCTTTCCCTCTCCTCTTCCTCCTCCTCACCGGCTGCCAGTGACCCTGAACTTGTAGTGCAAGATGTGCATAGGAGCATCAACGAATCGAGGAGGAATTTGGCCTATCTCTCGTGTGGAACGGGCAATCCGATCGACGATTGTTGGCGATGTGACCCGAATTGGGAAAAGAATCGTCAGAGGCTAGCGGATTGTGCAATAGGGTTTGGAAAGAATGCTATTGGAGGAAGAGATGGAAAGATTTACGAGATCACGGATGATAGTGATGATGATCCTGTAACCCCAAAACCGGGTACATTACGGTATGCGGTGATCCAGGACGAACCTCTTTGGATAATTTTCCCCCGCGACATGACCATCAGGCTGAAAGAGGAACTGATCATGAACTCGTTCAAAACAATTGACGGCAGAGGGGCTAGTGTTCACATTGCTGGCGGTCCGTGCATCACTATTCAATACGTTACGAATATTATCATCCACGGGATAAACATACATGACTGTAAGCAAGGAGGGAATACTGACGTGAGGGACTCCCCAGGGCATTACGGGTGGAGGACGATATCGGACGGTGATGGGGTATCGATCTTCGGCGGGAGCCATGTTTGGGTGGACCATTGCTCATTGTCAAACTGCAACGACGGGTTGATTGATGCAATCCATGGGTCCAATTTCATCACCATCTCGAACAACTATATGACCCACCATGATAAGGTCATGTTGTTAGGACACAGTGATTCCTACACCCAAGATAAGGACATGCAAGTAACTATAGCTTTCAATCACTTTGGAGAAGGCCTTGTCCAAAGAATGCCTAGATGTAGACATGGATATTTCCATGTGGTGAACAATGACTATACCCATTGGGAGATGTATGCAATTGGAGGTAGTGCTTCACCCACCATTAATAGCCAAGGCAACAGATTTGTAGCTCCAGATGATAGATCCAGCAAAGAGGTGACTAAACGTGAGGAGGCATCGGAGGACGAATGGAGCAGCTGGAATTGGAGGTCAGAAGGAGACTTGCTGGTAAACGGTGCGTTTTTTACAGCATCAGGAGCTGGATCTTCGTCCACGTATGCAAGAGCTTCTAGTTTGAGTGCGAGACCATCTTCTCTTGTCGGTTCGATAACGACCGCGGCGGGTGTATTGAATTGCAAGAAGGGCTCCCGTTGCTGA 1236 48.22 MAPLHSSSLSLSLIFLFSLLTLSLSSSSSSPAASDPELVVQDVHRSINESRRNLAYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYEITDDSDDDPVTPKPGTLRYAVIQDEPLWIIFPRDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTDVRDSPGHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSNFITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFVAPDDRSSKEVTKREEASEDEWSSWNWRSEGDLLVNGAFFTASGAGSSSTYARASSLSARPSSLVGSITTAAGVLNCKKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1209138 1211056 - Conep13aG0019700.1 Cone13ag0192 450579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0192 411 Gene3D - 62 404 IPR012334 -
Cone13ag0192 411 FunFam Pectate lyase 62 404 - -
Cone13ag0192 411 SMART amb_all 137 334 IPR002022 -
Cone13ag0192 411 MobiDBLite consensus disorder prediction 331 346 - -
Cone13ag0192 411 Pfam Pectate lyase 147 328 IPR002022 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cone13ag0192 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cone13ag0192 411 MobiDBLite consensus disorder prediction 323 346 - -
Cone13ag0192 411 SUPERFAMILY Pectin lyase-like 63 402 IPR011050 -
Cone13ag0192 411 PANTHER PECTATE LYASE 18-RELATED 17 408 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0192 Cone-Chr13:1209138 Cone14ag0210 Cone-Chr14:975609 3.12E-210 dispersed
Cone12ag0688 Cone-Chr12:6283813 Cone13ag0192 Cone-Chr13:1209138 3.46E-228 wgd
Cone13ag0192 Cone-Chr13:1209138 Cone16ag0056 Cone-Chr16:296641 8.64E-250 wgd
Cone13ag0192 Cone-Chr13:1209138 Cone2ag0944 Cone-Chr2:35120894 3.63E-250 wgd
Cone13ag0192 Cone-Chr13:1209138 Cone8ag0710 Cone-Chr8:7123264 3.11E-222 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0192 K01728 - gmx:100101868 692.189