Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0193 ATGACTGATGGGAGGAGGCATTCGGTTGATATTCCAATCTCAAAAACCCTGGTAGCACTTCGGAGAGTAAGGTCCTTGAGAGATCCATCCACAATTTCTATGAGAAAATTCTCTTCCTTGGTTGACAATGAGAATTGGGAAGCTAACTCGGATAATGAAATTTCACTACAATTTCTCAACGACCACCCGCAAGGTGTGTACGATAGTTATGGTATGTTGAAGTCAAATAATTTAAGTTTATATACACAAAGAGAAGATTCTAGGGTAGGCGATTTTGTAGGTGGTTCGATTCGCACCAAACAAGTTGATAATATCGAACTGGAACCAGAAGATAGAACAGATCAAACTGCAATATGGTCAAAATCCCATTATAATACAGTTAAACCATCTGAGTCCTTGGGCGATATTTCAAGTCAAGTCGGTAGCCCATCTCAATCTATAACAATAAGTGATTCCCCATTTTTCCGAAATGGAAAGGTTTATATTGAAGATCATAATCACCATGGATGTGCTGTAAGTTGTTGCTGGTCAAAGACTCCAAGATTTAGGAGATCAAATCTTCCTTCTGATACAGAAGAGAATCCTCTTTTATCTGCATATATAGAGGAGCCTTCTCTTTACGAAAATGGGAGGTTGAAAAGTGTGAGTAACGAAATTGCTCCATATGGAGAACTTCCGGGTGGTTTGAGTCAGAAATATAGGCCAAAATCGTTCGATGACTTGGTTGGGCAGAATGTGGTAGCAAGGTCTCTTTGGGGTGCTATTTTGAAAAGAAAGATTAGCTCTTTCTATCTTTTCCATGGCCCACGTGGGACTGGAAAGACCTCCACCTCAAGACTATTTGCTGCAGCTCTTAATTGTCTCTCTGCTTTGGAAAATAGGCCATGTGGTCTTTGCGAAGAATGTGTTTTGGTTTTTTCGGGAAGGAGTAGAGATGTGAAGGAAATAAATTCTATGAGAATTAACAAGACTGAAAGAGTTAGATCCCTTATTAAGAATGCAATGAACCCTCCAATTCCTTCTCGGTTTAAGATTTTCATCATTGACGAGTGCCATTTTTTGCGGGTGGAAACTTGGGCAACTTTATTAAGAAGCATAGAGAATCTCTCTCAACATGTGGTTTTTGTGATGGTTACTCCGGATCTTGATAAGATCCCTCGAAGTGTGGTTTCAAGGTCTCAGAGATATCACTTTCCGAAGATAAGAGATGCTGATATTGCTACTAGATTGGGCAAGATTTGTCTTGAAGAGGATCTTCATTTTGATCAGATTGCTTTGGATTTCATTGCTGTAAGGTCTAGTGGGTCACTTAGAGATGCAGAGATGATGCTTGAGCAGCTGAGCTTGCTTGATAAGAAAATTACTTTGCCCCTGGCCCATGAGCTAATTGGGATTGTTTCTGATGATGAATTGCTTGAGTTGCTGGATTTGGCTTTATCATCAGACACTTCTAATACGGTAATAAGAGCAAGAGAGCTAATGAGATCAAGGATCGATCCTATGCAGCTTATTTCACGGTTGGCAAATCTCATAATGGACATTCTTGATGGAAAATGTGAGGAAAGTTGTTCTGAAGCCAGAAGAAAGTTTTCTAGTGGTCATACTGCCGAAGGATACTTGCAGAAACTGAGTCATGCTTTGAAAATACTTTTGGAAACCGAAAAACAATTTAGAATCTCGAAGAATCAGACAACATGGCTGACGGTGGCTCTATTACAATTAAGCTCTGTGGAATCTTCCTCCTTGGATTCTAATGAATCAAAGCAAGGTTTGAGAAATGCACGTGAGAAAGATGGTGAAGTTTATTGCTTCACATCACCCAACGGAGAGAAGATGAATAATCTAGTCAATTGTTTATCTAATGGCAACAAACCATGTAAGTTGGGGCTGTTGGATGATTGTAAAGGAACATTGGAATCCATTTGGAAGAGAGTGGTTGAATTATGCCAATCAAACTCTCTCAAGAACTTTCTTCAAAAACAAGGGAAATTGTCTTCTCTCTCAGTTAATCAAGGTCTCGCGGTAGCCGAATTACAATTCTGCCATCCAGACCACGTATCTAGGGCCGAGAAGTCATGGAAACTCATAGCAAGCTTACTTCAATCCTTACTCAGTTGCAACGTGGAGATCAGTATCACCCTTACATGTTACCCAGCATCCGATTCAAAGCTTTACACATTCAAGAAAAAAACATTCAGCTTGTTCAACTGTTCTCGAAGAATGAAACGCCACTCCAAATCACAACCATCTTCAGAAAAAGGAAGTGAATCGGATTATTACTCCAACATCACACCTCAAAAGCTCATGATCCAAGACACCCCTCTTTTAACCTGTTCCTCGGATTATGGATCTCAAATGGGGGCTGTAAGAAAACTGAGAAATAGTGATGGGAATGTCCTTAGCACTAGAACAACTACAACTGCATCCCGGAAATCTTTTCAAGACGGGGTTCAGAAGACTCCTGGTGGGTTTTTGGTAAATTCCTCTAATAATGAAGGACAGGATTGGAGATGCCGGTCTTTATCGTATCAAGAAGAGCGGGAGAGGCGGCCCAATTGTTTCCCGAAAACTCTGAGGCTTCAGAAAAGATTGCAGCCTTCAGAAATTTCCGAGATGATTTGTTGTGTTGAGCAACAAAACTAA 2643 40.37 MTDGRRHSVDIPISKTLVALRRVRSLRDPSTISMRKFSSLVDNENWEANSDNEISLQFLNDHPQGVYDSYGMLKSNNLSLYTQREDSRVGDFVGGSIRTKQVDNIELEPEDRTDQTAIWSKSHYNTVKPSESLGDISSQVGSPSQSITISDSPFFRNGKVYIEDHNHHGCAVSCCWSKTPRFRRSNLPSDTEENPLLSAYIEEPSLYENGRLKSVSNEIAPYGELPGGLSQKYRPKSFDDLVGQNVVARSLWGAILKRKISSFYLFHGPRGTGKTSTSRLFAAALNCLSALENRPCGLCEECVLVFSGRSRDVKEINSMRINKTERVRSLIKNAMNPPIPSRFKIFIIDECHFLRVETWATLLRSIENLSQHVVFVMVTPDLDKIPRSVVSRSQRYHFPKIRDADIATRLGKICLEEDLHFDQIALDFIAVRSSGSLRDAEMMLEQLSLLDKKITLPLAHELIGIVSDDELLELLDLALSSDTSNTVIRARELMRSRIDPMQLISRLANLIMDILDGKCEESCSEARRKFSSGHTAEGYLQKLSHALKILLETEKQFRISKNQTTWLTVALLQLSSVESSSLDSNESKQGLRNAREKDGEVYCFTSPNGEKMNNLVNCLSNGNKPCKLGLLDDCKGTLESIWKRVVELCQSNSLKNFLQKQGKLSSLSVNQGLAVAELQFCHPDHVSRAEKSWKLIASLLQSLLSCNVEISITLTCYPASDSKLYTFKKKTFSLFNCSRRMKRHSKSQPSSEKGSESDYYSNITPQKLMIQDTPLLTCSSDYGSQMGAVRKLRNSDGNVLSTRTTTTASRKSFQDGVQKTPGGFLVNSSNNEGQDWRCRSLSYQEERERRPNCFPKTLRLQKRLQPSEISEMICCVEQQN 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1215781 1220844 + Conep13aG0019800.1 Cone13ag0193 450580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0193 880 SMART AAA_5 260 402 IPR003593 GO:0016887(InterPro)
Cone13ag0193 880 Pfam DNA polymerase III, delta subunit 244 401 - -
Cone13ag0193 880 NCBIfam DNA polymerase III subunit gamma/tau 229 574 IPR012763 GO:0003887(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)|GO:0009360(InterPro)
Cone13ag0193 880 Gene3D - 402 460 - -
Cone13ag0193 880 CDD HLD_clamp_pol_III_gamma_tau 401 464 IPR045085 -
Cone13ag0193 880 Pfam STICHEL, DnaA_N-like alpha-beta domain 634 714 IPR054506 -
Cone13ag0193 880 Gene3D - 227 399 IPR027417 -
Cone13ag0193 880 CDD AAA 255 392 - -
Cone13ag0193 880 SUPERFAMILY post-AAA+ oligomerization domain-like 465 576 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone13ag0193 880 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 230 576 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone13ag0193 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 463 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0193 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0193 Cone-Chr13:1215781 Cone3ag0884 Cone-Chr3:4537763 6.61E-106 dispersed
Cone13ag0193 Cone-Chr13:1215781 Cone19ag0187 Cone-Chr19:1178428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g878 . . . . Bpe12g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0193 Cone19ag0187 . . . . Blo13g00158 Blo15g00239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004154 1 1 4 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43