Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0196 ATGTCGGAATCACTTGAACCTCCATTGGCTGTGAAACCACAAGCTTCCGAAGTCACTCCGAGCTCCATTTATGATAGCTCGAAGCCTCTTCAACCTCCCAAGCTCGTTATCTTGGCTGACCTCAACGTCGATCCTCCTGAAACAGACGACGATGATCCTGTGGTCGCATCAGCTCCAGACCTCTCTAGGTTAGCTATTGGTGAAAGCAGTCAAGATAAAAGTATCTTAGTCTGCAGAGATTCAGATATTGTAGATGTTGAAGATAAACGTATCAACAAGTTGGGGAGATCTCGATCGAGAATTAACAAGGTAGATGCCTCTCTTGATAGTGTAGCTGATGCAGATGGTGATCATGGTCACGGGATTCCATCATCTCGTGAGGAAAAAGTCAGCGGCCTTAAAACTGGTTTGGTTCATGTCTCGAGGAAAATGCCAAAAAATGCTCATGCTCATTTTATTCTTGGCCTAATGTACCAGAGGTTGGGGCAGGCACAAAAGGCAGTTCCGGCATATGTGAAGGCAGAGGAGATATTACTCCGTCCTGAGGCAGAGGTTGATAGGCCGGAGTTGCTCTCTTTGGTTCAGATTCACCATGCACAGTGCCTTCTACTGGAGAGTTCAGGGGATAATAGTTCAGATAAAGAACTTGAACCTGAAGAGCTTGAGGAAATTCTTTCTAAGCTCAGAGAGTCGATGAAATCTGATATTAGTCAGTCAACTGTGTGGAATACCCTTGGTTTGATACTTCTTTCAAGTGGTCGTTGGAAGAGTGCAATTTCAGTTTTGTCCACCTTGTTGCCTCTTGTTCCTGACAACTATGATTGTCTAGGAAACCTTGGAATAGCGTACCTTCAAAGTGGAAATATGGAACTATCAGCAAAATGTTTCCAAGAGTTGATTCTGAAAGATCAAAACCATCCTGCAGCCTTAATCAACTATTCTGCCCTCCTCTTGTGTAAACACGGTTCTGCTGTTGCAGGTGCTGGCGCTAATGCTGGCGATGCTGCTGCTGTTAGTGATATCACAGCTGTGAATGTTGCAAAGGAGTGTCTTCTTACTGCACTAAAAGCCGACCCAAAAGCAGCACATATTTGGGCAAATCTTGCTAATGCATATTTTGTTACTAATGATCATAGAAGTTCTAGCAAATGCTGGGAGAAGGCAGCAAAACTTGAGCCAAACTGCATGTCAGTGCGTTATGCTGTTGCTACACACAGAGTAAAGGATGCTGAAAGGGCACAAGATCCTAATGAACAGCTTTCTTGGGCCGGAAATGAGATGGCCTCAATTATAAGAGATGGAGATGCATCTAATATCGAGCTCCCTATTGCATGGGCCGGACTTGCTATGGTCCACAAAGCCCAACATGAGATTACTGCAGCTTTTGAAACTGAAAAGAATCAGCTTATGGAAGTTGAAGAGCACGCTGTCGCCAGTTTGAAACATGCAATATCAGAGGATCCAGATGATGCCGTGCAGTGGCACCAGATCGGCCTCCATAGCCTTTGTACCCAACAATTCAAAACATCCCAAAGGTACCTCAAAGCTGCGGTGGCCCGTTTCAAAGAATGCAGCTATGCATGGTCAAACCTTGGTATTTCGTTGCAGCTTTCGGGAGAACCATCACAAGCCGAGCTAGCATACAAACGAGCCTTATCATTGACGAGCGGGCAAGCACATGTAATATTTTCCAACCTTGGAAACCTATACAGGCAACAAAAACAGTATGAAAAGGCCAAGGCCATGTTCTCTAAGTCATTAGAGTTACGACCCGGTTATGCACCTGCATACAACAATCTGGGTCTTGTATTTGTTGCCGAGGGGCAATGGGAGGAAGCTAAATATTGTTTTGACAGAGCCCTCCAGGCGGACCCCATGCTGGATGTAGCTAAATCCAACATGATCAAAGCACAAGCCTTGTTTTGA 1926 45.07 MSESLEPPLAVKPQASEVTPSSIYDSSKPLQPPKLVILADLNVDPPETDDDDPVVASAPDLSRLAIGESSQDKSILVCRDSDIVDVEDKRINKLGRSRSRINKVDASLDSVADADGDHGHGIPSSREEKVSGLKTGLVHVSRKMPKNAHAHFILGLMYQRLGQAQKAVPAYVKAEEILLRPEAEVDRPELLSLVQIHHAQCLLLESSGDNSSDKELEPEELEEILSKLRESMKSDISQSTVWNTLGLILLSSGRWKSAISVLSTLLPLVPDNYDCLGNLGIAYLQSGNMELSAKCFQELILKDQNHPAALINYSALLLCKHGSAVAGAGANAGDAAAVSDITAVNVAKECLLTALKADPKAAHIWANLANAYFVTNDHRSSSKCWEKAAKLEPNCMSVRYAVATHRVKDAERAQDPNEQLSWAGNEMASIIRDGDASNIELPIAWAGLAMVHKAQHEITAAFETEKNQLMEVEEHAVASLKHAISEDPDDAVQWHQIGLHSLCTQQFKTSQRYLKAAVARFKECSYAWSNLGISLQLSGEPSQAELAYKRALSLTSGQAHVIFSNLGNLYRQQKQYEKAKAMFSKSLELRPGYAPAYNNLGLVFVAEGQWEEAKYCFDRALQADPMLDVAKSNMIKAQALF 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1235904 1240079 + Conep13aG0020100.1 Cone13ag0196 450583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0196 641 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 Gene3D Tetratricopeptide repeat domain 560 637 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 273 306 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 239 272 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 362 395 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 560 593 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 525 558 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 594 627 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SMART tpr_5 148 181 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 ProSiteProfiles TPR repeat profile. 594 627 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 SUPERFAMILY TPR-like 240 464 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 SUPERFAMILY TPR-like 474 626 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 Gene3D Tetratricopeptide repeat domain 137 328 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 Gene3D Tetratricopeptide repeat domain 429 559 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 ProSiteProfiles TPR repeat region circular profile. 560 591 - -
Cone13ag0196 641 Pfam Tetratricopeptide repeat 562 623 - -
Cone13ag0196 641 Gene3D Tetratricopeptide repeat domain 335 406 IPR011990 GO:0005515(InterPro)
Cone13ag0196 641 Pfam Tetratricopeptide repeat 506 558 - -
Cone13ag0196 641 Pfam Tetratricopeptide repeat 249 309 - -
Cone13ag0196 641 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 36 639 - -
Cone13ag0196 641 Pfam Tetratricopeptide repeat 148 177 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 Pfam Tetratricopeptide repeat 362 395 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 ProSiteProfiles TPR repeat profile. 560 593 IPR019734 GO:0005515(InterPro)
Cone13ag0196 641 MobiDBLite consensus disorder prediction 1 30 - -
Cone13ag0196 641 ProSiteProfiles TPR repeat region circular profile. 594 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0196 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32