Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0203 ATGGCGACTCCTATAGAGGCCGAGTCACCTCGGAAACAGCCTCGACCAGGTAGGGGCGGCTTCGAAGCTCATGGACTCTCCGAAGAGGAAGCTCGAGTCCGAGCAATCTCGGAGATCGTCAACTCCATGGTCGTCCTTTCACGTAAAGGCCAAAACGTCGACCTAAACGCCCTAAAATCCGCCGCCTGCCGGAAGTACGGACTCTCAAGGGCTCCAAAGCTCGTTGAGATGATCGCCGCTCTGCCTGACTCTGACCGCGAGTCTTTGCTGCCTAAACTCCGTGCCAAGCCGGTTCGAACCGCCTCTGGAATTGCAGTCGTGGCGGTGATGTCGAAGCCGCATAGATGTCCTCATATTGCGACGACGGGGAATATCTGCGTGTACTGTCCTGGAGGACCTGACTCGGACTTTGAGTATAGTACTCAGTCGTATACTGGCTACGAGCCAACTAGCATGCGTGCAATTCGTGCAAGATACAACCCATATGTCCAGGCTAGAAGCAGGATAGATCAGCTGAAGCGTTTGGGTCACAGCGTCGACAAGGTAGAATTCATCTTGATGGGTGGTACTTTCATGTCGTTGCCAGCTGATTACCGTGATTTCTTTATACGAAATCTTCATGATGCTTTGTCGGGACACACTTCTGCTAATGTTGAAGAGGCAGTTGCCTATTCAGAGCATGGTTCAGTTAAATGTATAGGCATGACAATTGAAACGCGGCCTGATTATTGCCTTGGACCCCACTTGCGGCAAATGCTTTTATATGGTTGTACCCGCCTGGAGATCGGAGTTCAAAGCACATACGAGGATGTGGCTAGAGATACTAATAGAGGACATACTGTAGCTGCTGTGGCTGATTGTTTTTGCTTGTCTAAGGATGCTGGCTTCAAGGTTGTAGCACACATGATGCCCGATCTTCCAAATGTTGGGGTTGAAAGAGACATGGAAAGTTTCAAGGAATTCTTTGAGAGTCCACTATTTAGAGCTGATGGGCTCAAAATCTATCCTACACTTGTAATCCGTGGAACTGGGCTCTATGAGCTTTGGAAAACTGGCAGGTATAGAAATTACTCTCCAGAGCAACTTGTTGATATAGTGGCAAGGATATTGGCAATGGTACCCCCTTGGACTCGGGTTTATAGAGTTCAGCGGGATATTCCTATGCCTCTAGTCACCTCTGGGGTTGAGAAAGGAAACCTTAGGGAGCTTGCTCTAGCTCGGATGGAAGACCTGGGCTTAAAATGTCGTGATGTTAGAACAAGGGAAGCTGGTATCCAGGACATTCACCACAACATTAGGCCGGAAGAAGTTGAGCTTGTTCGTAGGGATTACACTGCAAATGAAGGTTGGGAAACATTCCTATCATACGAAGATACACGCCAGGATATTCTTGTTGGATTGCTGAGGCTGCGAAAATGTGGTCGAAATACTACCTGTCCTGAACTCATCGGGAGGTGCTCTATTGTTCGTGAGCTCCATGTCTATGGAACTGCAGTACCAGTTCACGGGCGTGATGCTGACAAGTTGCAACATCAGGGTTATGGCACTCTTCTAATGGAGGAAGCGGAGAGAATTGCTCATAGGGAGCATAGGTCGACAAAAATAGCTGTTATTTCTGGTGTCGGAACCCGCCATTATTATCAGAAATTAGGTTATGAACTTGACGGTCCTTACATGTCCAAAACCCTAGATTAA 1695 48.2 MATPIEAESPRKQPRPGRGGFEAHGLSEEEARVRAISEIVNSMVVLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDSDRESLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDFFIRNLHDALSGHTSANVEEAVAYSEHGSVKCIGMTIETRPDYCLGPHLRQMLLYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLSKDAGFKVVAHMMPDLPNVGVERDMESFKEFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYSPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHNIRPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELIGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIAHREHRSTKIAVISGVGTRHYYQKLGYELDGPYMSKTLD 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1256737 1260047 - Conep13aG0020800.1 Cone13ag0203 450590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0203 564 MobiDBLite consensus disorder prediction 1 26 - -
Cone13ag0203 564 CDD Radical_SAM 113 357 - -
Cone13ag0203 564 SMART MiaB 106 368 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone13ag0203 564 Pfam Radical_SAM C-terminal domain 330 409 IPR032432 -
Cone13ag0203 564 PIRSF HAT_Elp3 21 564 IPR034687 -
Cone13ag0203 564 SFLD Radical SAM 54 563 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone13ag0203 564 SUPERFAMILY Radical SAM enzymes 136 375 - -
Cone13ag0203 564 ProSiteProfiles Radical SAM core domain profile. 99 389 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone13ag0203 564 Gene3D - 415 564 - -
Cone13ag0203 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 23 563 IPR039661 GO:0002926(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0033588(PANTHER)
Cone13ag0203 564 MobiDBLite consensus disorder prediction 11 26 - -
Cone13ag0203 564 SFLD ELP3-like 54 563 IPR034687 -
Cone13ag0203 564 Pfam Radical SAM superfamily 125 310 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone13ag0203 564 FunFam Elongator complex protein 3 412 564 - -
Cone13ag0203 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 372 559 IPR016181 -
Cone13ag0203 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 413 564 IPR000182 GO:0016747(InterPro)
Cone13ag0203 564 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 563 IPR034687 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0203 K07739 - - mdm:103408418 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0203 Cone-Chr13:1256737 Cone19ag0191 Cone-Chr19:1199545 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0203 Cone19ag0191 . . . . . . Bda11g01622 . . Bpe15g00195 Bma03g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012251 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 0 1 1 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44577 PF02466 Tim17 1.70E-08 No_clan Cone TR