Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0209 ATGGCACCAACAGTTCCGATAGACCTTACTGGACTAAAAGAATCAAAAAAGCTTTCACTTTTACAGACAATGGGTAAATCAAGGAAATACTCTAAAGGGCAATTGTCTGGGTTTGTTCCAGATTATAGGCATGCTGTTGAGACCATTGGTGATTCAGAGGTGCTTGGAAGCTCTGGAGGAATTGACACAGAAATGACTGCTTCTGAGGATTCTTGTGCCCAGGAAAGGAAATGCATTAATTCGAACATAGATGGTTACAGTAGTTTTGATGTTCCTGTACAAGTTCTGTCATGGTCAAAAATGCCGCAATCTGAAAGAAAGGACTTAGAATTGAGGTTGAGAATGGAACTAGAACAGGTTCAGACTCTCCAGAAGAAAGTTTCCAGCTTAAGCTCTAATGTTATACCATCTGGTGATATTCGAAGTTTTAACGATGGCCAAAAGAGAGCTCCACTAGAAGCCCCAAAGGGTAAAAAAAGGGCACCTACTGGCCGTAATGGACCCCGAGCAAAAAGGAGTATGTCTGGGTGTTTTGAACCAGTGAAACAGCCTGTTCCAGCTACTACTTCAATTGCCTCATTGGTTAAACAATGTGAAACACTACTGAACCGTTTGATGTCACATCAGTATAGTTGGGTTTTCAATACACCAGTTGATGTGGTGAAATTGAATATTCCAGATTATTTCTCTGTCATAAAGCATCCAATGGACTTGGGCACAGTGAAGGGCCGGCTAATTAGTGGTGGATATTCAAGTCTTTTTGATTTTGCTGCAGATGTGCGACTTACTTTCTCAAATGCCATGACTTATAACCCACGTGGAAATGATGTACATTTAATGGCCGAGACACTAAGTAAATTTTTTGAAATGAGATGGAAAGCTATTGAGAAGAAGATCCCAGCAGCGGAAGATGTGCAATTGGTACCCGCAAGAACTGGTATTCGACTGGCAAATGAAGTTGGTCCCTATGTGCCACCTTTAAAGAAGACGGAATTTATCATGGATGACTGTGATATCCAGCCAGTTGTTGTAACGAAAATTATGACTGATGAGGAGAGACATAAGCTGGGTGTGGAGTTGGAGTCGCTGTTGGGAGAACTCCCCGAAAGAATTGTGAATTTCTTAAAGGAGAATAGTGTCAGTTCTGATCAAACCGGCGAGGATGAGATTGAGATTGATATTGATGCCCTAAGTGATGATACATTGTTCAGCCTAAGAAAACTTTTGGATGATTATTTGTTGGAAAAACAGAGAAGCCAAGCAAAGGCCGAACCTTATGAATTGGAGCTTCATAATGAATCTGGAATAAGCAATTCATCGATGCAACCATGTGCAGGCAACGATCCAGCTGATGAGGATGTGGATATTGTTGGTAGAAATGATCTGCCAGCTTCAACCCACCCTCCCGTAGAGATAGAGAAAGATACACCTCAAAGAAATAGTAAATCCAGTAGTTTCAGTCGGTCAAGTAGTGAATCAGGCTCTTCATCTAACGATTCTGGCTCAGACAATGAGTCTGATAGGGATTTTGGCACCGATAAATCATTAGGTCCTGCCAAAACTAACAAGGAACTGTTGGACAAGGAAAATAGTTTGGATCCCAAGAGAGGTGATGGTGGTGATTTGAAAATTCAAAGCCATCAAGGGAATGGACCAGCCCAGCAGAATTCTCTATCGAAGCCAATATCTGTCGAGACAGATGGCCATCAAGAAGAGGGGGGGAGTGCTCCTTCTGAGAGGCAAATCTCTCCTGAAAAGCTTTACCGTGCAGCTTTATTGAAGAATCGTTTTGCTGACACCATATTGAAAGCTCGAGAAAAGACACTTGAGAAGGGTGATAAACAAGATCCTGAAAAGTTGCGAATCGAGAGAGAGGAGCTTGAAAGGCAGCATAGAGAAGAAAAAGCTCGATTGCAAGCAGAGGCCAAGGCGGCAGAGGTGGCTCGAAGGCAGGCTGAAGTAGAAGCAGCAGCCGAAGCCAAAAGGAAGAGGGAATTAGTGAGAGAAGCTGCCCGGCAGGCATTACTGGAGATGGAAAGAACGGTTGAAATAAATGAGAATAGCCAGCTAATGGAAGATCTACAGAAGCTTCAGGCTACTTCTTTGACTGAAGGTTTACCGAGTTTCATTGAGGAGACTGGCCCAGAGAATGACGAGAATAATGTTTTGGGTAGTTTCAAGCTACAGGGGAGTAGTAACCCCTTGGAACAACTTGGCTTATACATGAAGATGGATGAGGAAGAGGAGGAGGAGGAGGAAGGAAGTGAACAACAAGAGGAACAGCAACAACATGAACAACAAGAAGAGCAAGAGCAAGAAAAACATGAACAACAAGAACAACAAGAACAACAAGAACAACAAGAACAGCAAGAACAGCAACAAGAAGAACAAGAAGAACAAGAAGAACAAGAAGAACAAGAAGAACAAGAAAAAGAAAGAGAACTACAACACCAGAGTGATGCTGAACCTAAAAATGATGCAGAGGAAGGCGAAATTGATTGA 2502 42.49 MAPTVPIDLTGLKESKKLSLLQTMGKSRKYSKGQLSGFVPDYRHAVETIGDSEVLGSSGGIDTEMTASEDSCAQERKCINSNIDGYSSFDVPVQVLSWSKMPQSERKDLELRLRMELEQVQTLQKKVSSLSSNVIPSGDIRSFNDGQKRAPLEAPKGKKRAPTGRNGPRAKRSMSGCFEPVKQPVPATTSIASLVKQCETLLNRLMSHQYSWVFNTPVDVVKLNIPDYFSVIKHPMDLGTVKGRLISGGYSSLFDFAADVRLTFSNAMTYNPRGNDVHLMAETLSKFFEMRWKAIEKKIPAAEDVQLVPARTGIRLANEVGPYVPPLKKTEFIMDDCDIQPVVVTKIMTDEERHKLGVELESLLGELPERIVNFLKENSVSSDQTGEDEIEIDIDALSDDTLFSLRKLLDDYLLEKQRSQAKAEPYELELHNESGISNSSMQPCAGNDPADEDVDIVGRNDLPASTHPPVEIEKDTPQRNSKSSSFSRSSSESGSSSNDSGSDNESDRDFGTDKSLGPAKTNKELLDKENSLDPKRGDGGDLKIQSHQGNGPAQQNSLSKPISVETDGHQEEGGSAPSERQISPEKLYRAALLKNRFADTILKAREKTLEKGDKQDPEKLRIEREELERQHREEKARLQAEAKAAEVARRQAEVEAAAEAKRKRELVREAARQALLEMERTVEINENSQLMEDLQKLQATSLTEGLPSFIEETGPENDENNVLGSFKLQGSSNPLEQLGLYMKMDEEEEEEEEGSEQQEEQQQHEQQEEQEQEKHEQQEQQEQQEQQEQQEQQQEEQEEQEEQEEQEEQEKERELQHQSDAEPKNDAEEGEID 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1341013 1346060 - Conep13aG0021400.1 Cone13ag0209 450596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0209 833 PRINTS Bromodomain signature 241 259 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 PRINTS Bromodomain signature 209 222 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 PRINTS Bromodomain signature 259 278 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 PRINTS Bromodomain signature 225 241 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 Coils Coil 106 126 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 547 564 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 705 833 - -
Cone13ag0209 833 ProSiteProfiles NET domain profile. 338 420 IPR027353 -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 502 542 - -
Cone13ag0209 833 Coils Coil 741 821 - -
Cone13ag0209 833 Gene3D - 181 306 IPR036427 GO:0005515(InterPro)
Cone13ag0209 833 Pfam Bromodomain 198 282 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 Coils Coil 624 677 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 743 758 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 810 825 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 606 633 - -
Cone13ag0209 833 SMART bromo_6 187 297 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 MobiDBLite consensus disorder prediction 479 501 - -
Cone13ag0209 833 SUPERFAMILY Bromodomain 189 299 IPR036427 GO:0005515(InterPro)
Cone13ag0209 833 Gene3D - 345 420 IPR038336 -
Cone13ag0209 833 Pfam Bromodomain extra-terminal - transcription regulation 348 410 IPR027353 -
Cone13ag0209 833 ProSiteProfiles Bromodomain profile. 206 278 IPR001487 GO:0005515(InterPro)
Cone13ag0209 833 MobiDBLite consensus disorder prediction 789 809 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 434 584 - -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 714 736 - -
Cone13ag0209 833 PANTHER TRANSCRIPTION FACTOR GTE8 85 751 IPR052442 -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 759 782 - -
Cone13ag0209 833 CDD Bromo_plant1 196 292 IPR037377 -
Cone13ag0209 833 MobiDBLite consensus disorder prediction 138 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0209 Cone-Chr13:1341013 Cone3ag1069 Cone-Chr3:29356971 6.22E-42 dispersed
Cone13ag0209 Cone-Chr13:1341013 Cone16ag0975 Cone-Chr16:9688860 1.26E-183 wgd
Cone13ag0209 Cone-Chr13:1341013 Cone19ag0196 Cone-Chr19:1228958 0 wgd
Cone13ag0209 Cone-Chr13:1341013 Cone2ag0059 Cone-Chr2:292164 8.04E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47