Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0210 ATGGCGGCAGGGAGAGATGATAATCCGAGAAGGAGGGAGGTTTATAAATACACCAAAATAGAATATGAACATTCCTGGAAGGGTTCTCGTGATAATAGGGCAGTTCACCGGGATTATAGCTACAAGCAAAAGAATGGGAATAGATTTCTATCAGGTGAAATCAACTCGGACCATGGTAAAAATGGCTCATATGGTAGAACAGAAGAGCGGAAGTTGGTTAAGTTACAAACCAGGAGCGGTGCTGATGAGACTTACAGCAAAGTCGGAGATCCAGAGAATGAAGATCAAGTTCAGTTGCCTGCTGAGAAAAGAAGGAAGGTCTCCCCTAATTTATTGGACAGAGTTGAAAATGAAGTAAGAATTCAATGCAAGAACTGGATCACATCTGTTGCCACTCTGATTACTCCAACTAAGGATGAAACACGTGGTCAAGAGTTGAGTGCAGTTTCTTCTAGGATTCATGTTCTTAAAAATCAGGGGCTGGAGTTTTCCTCGGATGAGCCAGTATCAGAAGTTGAGTACGTGGAGACTCCTCTTTCATCTCCAGCAAGCTCGTTCTCTTCTATTCGTCCCAACTATTTTGAAGAAAATGGCCAAGAAAAAGATGGTATTGAGGAGGAAGAGGTCGCTCATACTCGGGATATTGCTATGTCAAGGTGGGCATCTGACAGTGATCCTGCAGGAGATATATGTTCATCTGATGATGAAGAAACACAAAAATGGAGAAGGGGTCCTCTTGATTTGGAATCTCCTAAGCAAGTAATAGAAAGGTATTCCAGTCCCGAGTCTGGGGAATTCCAGAGGGAAGACTCAGATGGGAATAGGGTAACAGTATATGATAATGACAAAGGTAGCCTTAGGGAGGCAGACAATGGGGTTGTTTCTTCTGCAAATGATTACGATGATACCATCATGGCTGATGTCAATGAAAAACACCTCGATGGTCTTATTGTTAGTGAAGATGGTTCTGAAATCCAGGATAAGAATGACCTTGAAGAACCTATTCTACCAGCCCAAAAAAGTGTAAACATGCTACAGGAATGCAGAAGTGTGTTTGAATATGAAAAGCTCAACAAAATAAGTGAAGGTACGTATGGTATTGTGTATAAAGCAAAGGATCTGAAGTCGGGAGAGTTAGTGGCGCTAAAGAAGGTGAAGATGAATATAGATAGGGATGGATTCCCCATTTCATCTTTGAGGGAAATAAACATTATGTCATCCTTTGATCACCCTTCAATTGTAGGTGTCAAAGAAGTTGTTATGGATGACCTTAATAGTGTTTTTATGGTTATGGAATACATGGAGTATGACCTCAAGAAGGCAATGGAAGTAATGAAGCAGCCCTTTAGTGTAAGTGAGGTTAAACTCATGATGATGCAGTTGTTGGAGGGAGTCAAGTATCTTCATGATAATTGGGTGCTTCATAGGGATTTGAAGACTTCTAATCTTCTTTTGAACAAGGATGGAAATTTGAAAATATGCGATTTTGGATTGTCGCGCCAGTATGGGAGTCCACTCAAACCATATACTGCTCTTGTTGTCACCATGTGGTACAGGTCACCTGAGCTTCTTTTAGGAACAAAACAGTACTCAACAGCAATCGACATGTGGTCTGTGGGGTGCATAATGGCTGAAATGTTAACGAAGGAGCCTTTGTTTAGAGGGAAAACAGAAATTGATCAACTGGATAAGATTTTCAGATCCCTTGGCACACCAAGTGATAGCATTTGGCCTGGATTTTCCGAACTTCCAGGGGCTAAGTCAAAATTTGTACAACAACCGTATAATTTGCTACGGAAGAAGTTTCCAGCCACATCTTTCACAGGATCTCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACCGACTATTAACATATAATCCTGAGAAGAGAATTTCAGCAGAGGATGCTCTTAATCATCCCTGGTTTTGTGAAGTTCCCCTTCCAAAATCTGATATTAAGCCCTTACGTGGCTAA 1980 41.11 MAAGRDDNPRRREVYKYTKIEYEHSWKGSRDNRAVHRDYSYKQKNGNRFLSGEINSDHGKNGSYGRTEERKLVKLQTRSGADETYSKVGDPENEDQVQLPAEKRRKVSPNLLDRVENEVRIQCKNWITSVATLITPTKDETRGQELSAVSSRIHVLKNQGLEFSSDEPVSEVEYVETPLSSPASSFSSIRPNYFEENGQEKDGIEEEEVAHTRDIAMSRWASDSDPAGDICSSDDEETQKWRRGPLDLESPKQVIERYSSPESGEFQREDSDGNRVTVYDNDKGSLREADNGVVSSANDYDDTIMADVNEKHLDGLIVSEDGSEIQDKNDLEEPILPAQKSVNMLQECRSVFEYEKLNKISEGTYGIVYKAKDLKSGELVALKKVKMNIDRDGFPISSLREINIMSSFDHPSIVGVKEVVMDDLNSVFMVMEYMEYDLKKAMEVMKQPFSVSEVKLMMMQLLEGVKYLHDNWVLHRDLKTSNLLLNKDGNLKICDFGLSRQYGSPLKPYTALVVTMWYRSPELLLGTKQYSTAIDMWSVGCIMAEMLTKEPLFRGKTEIDQLDKIFRSLGTPSDSIWPGFSELPGAKSKFVQQPYNLLRKKFPATSFTGSPVLSDSGFDLLNRLLTYNPEKRISAEDALNHPWFCEVPLPKSDIKPLRG 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1354774 1359175 + Conep13aG0021500.1 Cone13ag0210 450597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0210 659 MobiDBLite consensus disorder prediction 221 280 - -
Cone13ag0210 659 MobiDBLite consensus disorder prediction 41 98 - -
Cone13ag0210 659 MobiDBLite consensus disorder prediction 233 250 - -
Cone13ag0210 659 MobiDBLite consensus disorder prediction 44 61 - -
Cone13ag0210 659 MobiDBLite consensus disorder prediction 62 77 - -
Cone13ag0210 659 FunFam Cyclin-dependent kinase G-2 436 656 - -
Cone13ag0210 659 FunFam cyclin-dependent kinase G-2 isoform X1 339 435 - -
Cone13ag0210 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0210 659 SMART serkin_6 354 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0210 659 MobiDBLite consensus disorder prediction 262 280 - -
Cone13ag0210 659 CDD STKc_CDC2L1 348 644 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0210 659 SUPERFAMILY Protein kinase-like (PK-like) 349 650 IPR011009 -
Cone13ag0210 659 Gene3D Transferase(Phosphotransferase) domain 1 436 655 - -
Cone13ag0210 659 ProSiteProfiles Protein kinase domain profile. 354 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0210 659 Gene3D Phosphorylase Kinase; domain 1 338 435 - -
Cone13ag0210 659 PANTHER CELL DIVISION PROTEIN KINASE 353 644 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cone13ag0210 659 Pfam Protein kinase domain 354 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0210 K08818 - - vvi:100250978 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0210 Cone-Chr13:1354774 Cone1ag1406 Cone-Chr1:56782156 5.33E-84 dispersed
Cone12ag0703 Cone-Chr12:6460617 Cone13ag0210 Cone-Chr13:1354774 4.30E-185 wgd
Cone13ag0210 Cone-Chr13:1354774 Cone19ag0197 Cone-Chr19:1240182 0 wgd
Cone13ag0210 Cone-Chr13:1354774 Cone19ag0228 Cone-Chr19:1478009 3.08E-63 wgd
Cone13ag0210 Cone-Chr13:1354774 Cone8ag0731 Cone-Chr8:7347584 1.14E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0210 Cone19ag0197 . . . . . Blo15g00063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030002 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82005 PF03080 Neprosin 1.20E-88 No_clan Cone PK