Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0215 ATGACGACTACGACCACCAGCATAGGCGGATGTGGCGAGGATCGAGTTCTGGCGACGGCTCAGCAGATCGTCAAGAGCCTCAATACTCCCAAAGAGGTCCGCGAGGATATGCTCTTGATCTTCTCCAGCTTCGACAATCGTCTATCCAACATATCTAATCTGATCAACGGCGATGATTCGAAGACAAGAGGGGAGGGGATAGACGAGGGGGAGGAGGAGGAGGATAGCCGGTTTGATGCAGCCGAGAAGGTGATTCTTCGTTGGGGATCCGACGATGTTTCTAGAGCTTCTCTTCCTTGGGAAGACTTTCCGGACGAGGTGGCTGAGTACTTGTCATCTGTCGATGAGATCATCAATTCGATGCAGGATCTTTCGGTCCGTGCGGATTCAGCTGATCTCATGGATAGGGCGGAGAACGCGATCCAGGTCGCCATGTCTAGGCTAGAGGAAGAATTCCGCCATATACTGATCCGAAGCACAGTTCCTCTTGACGCTGACGGCTTATACGGTTCGATCCGTAGAGTTTCTCTCTCCTTCGCTTGCAACGATGGTGAAATTGACGAAGAATTGGAGAGCTTTGGAGAGATAGATCGTGGCTCTGAGCGATTCCATGAGCGAGGGGCTAGTCTGGGAGATGACGTTTTCGTCGATTTGATTCATCCTGAAGCGGTTGTTGAGTTGAAGGAGATAGCGGATCGTATGATTCGATCTGGATATGAAAAGGAGGGTGTTCAGGTTTATAGTAGTGTTCGTCGTGATGCATTGGATGAGTGTTTGGCGATTCTTGGAGTTGAGAGGCTTAGCATTGAAGAGGTTCAGAAAATTGACTGGAAGATTCTAGACGAGAAGATGAAGAAATGGGTTCAAGCTGTTAAGATTTCTGTTCGAGTGCTTTTGACTGGAGAGAAGAGACTATGTGATCAAATCTTTAATGGGTCTGAGGATTGTAAGGAGGTTTGTTTCAATGAGACTGCAAAAGGTTGTTTGATGCAGCTGCTGAATTTTGGTGAGGCAGTGGCTATTGGAAAAAGGTCACCTGAGAAATTATTCAGGATTTTGGACATGTATGATGCTTTAGCTGATGCTTTTCCGGACTTGGAAGCGATGGTTACAGATGAGCTTGTGGTTGGAGAGGCACAAGGAGTGCTCTCTGGACTGAGAGAAGCTGCTAGAGGGACATTTGCAGAGTTTGAGAATGCTGTTAAGAGTGAGACTTCTCGGAAAGCAATGCTAAACGCTGAGATTCACCCGCTTACAAGGTACGTGATGAACTATGTGAAGTTGCTTGTGGAGTATAAAAACACACTGAACTCTCTTTTAGAAAATGGGGCAGAGGAACTGGGTGCTTTGCAGAATGATAAAGGCGAAAATTTGCAGTTAGAAAACATGTCTCCTATAGCTTGTAGACTTTTTTTTCTGCTATCATGTTTGGAGTCGAACCTTGAGGCGAAATCAAGGCTCTATGATGATGGGGCAATGAAATATATCTTTCTTATGAACAATATACTTTACATAGTGCAAAAAGTAAAAGATTCTGAGCTTGGAAAGCTTTTGGGTGATGATTGGGTACGTAAGCGCCGCGGCCAAATTCGCCAATATGCAACAAGTTATCTTAGAGCTTCGTGGATAAAGGTGTTGTCTTACTTAAAGGATGAGGGGATTGGTGGGAGCACTAGTAATGCCTCAAAGGTTGTTTTAAAAGAAAGGTTTAAGAATTTCAATGCCGGGTTTGAGGAAATATATAGGGTCCAAACAGCTTGGAAGGTGCCTGACAATCAACTGAGGGAAGAGCTTAGGATATCTATATCGGAAAAGGTGATTCCAGCTTATCGTGCTTTCATGGGAAGATTTGGAAGTCACCTAGAGGGTGGAAGAAATTCTGGGAAATACATAAAATACTCAGCAGATGATTTAGAACACTATTTACTGGATTTGTTTGAAGGATCACCTGGCGTTCTGCACCACCTCCGAAGAAAAAGTACATAG 1986 44.91 MTTTTTSIGGCGEDRVLATAQQIVKSLNTPKEVREDMLLIFSSFDNRLSNISNLINGDDSKTRGEGIDEGEEEEDSRFDAAEKVILRWGSDDVSRASLPWEDFPDEVAEYLSSVDEIINSMQDLSVRADSADLMDRAENAIQVAMSRLEEEFRHILIRSTVPLDADGLYGSIRRVSLSFACNDGEIDEELESFGEIDRGSERFHERGASLGDDVFVDLIHPEAVVELKEIADRMIRSGYEKEGVQVYSSVRRDALDECLAILGVERLSIEEVQKIDWKILDEKMKKWVQAVKISVRVLLTGEKRLCDQIFNGSEDCKEVCFNETAKGCLMQLLNFGEAVAIGKRSPEKLFRILDMYDALADAFPDLEAMVTDELVVGEAQGVLSGLREAARGTFAEFENAVKSETSRKAMLNAEIHPLTRYVMNYVKLLVEYKNTLNSLLENGAEELGALQNDKGENLQLENMSPIACRLFFLLSCLESNLEAKSRLYDDGAMKYIFLMNNILYIVQKVKDSELGKLLGDDWVRKRRGQIRQYATSYLRASWIKVLSYLKDEGIGGSTSNASKVVLKERFKNFNAGFEEIYRVQTAWKVPDNQLREELRISISEKVIPAYRAFMGRFGSHLEGGRNSGKYIKYSADDLEHYLLDLFEGSPGVLHHLRRKST 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1391865 1394869 + Conep13aG0022000.1 Cone13ag0215 450602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0215 661 FunFam Exocyst subunit Exo70 family protein 93 654 - -
Cone13ag0215 661 Gene3D Exocyst complex component Exo70 98 652 - -
Cone13ag0215 661 Pfam Exocyst complex component Exo70 N-terminal 78 157 - -
Cone13ag0215 661 Pfam Exo70 exocyst complex subunit C-terminal 285 644 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone13ag0215 661 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 649 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone13ag0215 661 SUPERFAMILY Cullin repeat-like 79 647 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0215 K07195 - - mdm:103454965 961.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0393 Cone-Chr11:1936486 Cone13ag0215 Cone-Chr13:1391865 7.92E-126 dispersed
Cone11ag1266 Cone-Chr11:9409923 Cone13ag0215 Cone-Chr13:1391865 1.16E-96 dispersed
Cone13ag0215 Cone-Chr13:1391865 Cone20ag1348 Cone-Chr20:8666061 1.69E-144 dispersed
Cone13ag0215 Cone-Chr13:1391865 Cone19ag0206 Cone-Chr19:1303296 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G03540 73.8 5.4e-275 944.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G03540 73.9 1.6e-274 942.6
Cone5ag0416 . 10 649 EXO70 exocyst subunit family AT5G03540 74.8 1.3e-273 939.5
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G03540 70.9 3.6e-263 904.8
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 886.3
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G52340 80.5 3.7e-297 1017.7
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G52340 78.2 2.4e-288 988.4
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G52340 72.1 5.5e-269 924.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G52340 71.3 8.8e-267 916.8
Cone5ag0416 . 12 649 EXO70 exocyst subunit family AT5G52340 72.3 4.8e-265 911.0
Cone13ag1144 . 145 621 EXO70 exocyst subunit family AT5G52350 64.3 1.5e-175 613.6
Cone19ag1123 . 145 621 EXO70 exocyst subunit family AT5G52350 62.6 3.2e-170 595.9
Cone5ag0416 . 147 649 EXO70 exocyst subunit family AT5G52350 58.8 1.4e-165 580.5
Cone11ag0966 . 150 662 EXO70 exocyst subunit family AT5G52350 58.8 3.1e-165 579.3
Cone1ag1422 . 147 649 EXO70 exocyst subunit family AT5G52350 58.9 3.4e-164 575.9
Cone1ag0768 . 1 617 EXO70 exocyst subunit family AT5G58430 68.8 5.0e-254 874.4
Cone5ag1050 . 1 621 EXO70 exocyst subunit family AT5G58430 69.5 6.5e-254 874.0
Cone1ag0768 . 1 616 EXO70 exocyst subunit family AT1G07000 53.0 2.8e-177 619.4
Cone5ag1050 . 1 620 EXO70 exocyst subunit family AT1G07000 52.8 5.7e-175 611.7
Cone16ag1017 . 53 682 EXO70 exocyst subunit family AT5G13990 53.9 4.6e-184 642.1
Cone2ag0024 . 72 686 EXO70 exocyst subunit family AT5G13990 53.9 1.2e-179 627.5
Cone20ag1348 . 9 609 EXO70 exocyst subunit family AT1G72470 63.7 9.0e-211 730.7
Cone17ag0057 . 9 609 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-209 726.1
Cone17ag0057 . 9 606 EXO70 exocyst subunit family AT1G54090 61.5 7.2e-205 711.1
Cone20ag1348 . 9 606 EXO70 exocyst subunit family AT1G54090 60.4 6.8e-203 704.5
Cone20ag1348 . 9 607 EXO70 exocyst subunit family AT3G14090 61.8 1.5e-210 729.9
Cone17ag0057 . 9 607 EXO70 exocyst subunit family AT3G14090 62.0 7.5e-210 727.6
Cone13ag0215 . 13 660 EXO70 exocyst subunit family AT5G50380 64.2 2.0e-232 802.7
Cone19ag0206 . 13 660 EXO70 exocyst subunit family AT5G50380 63.4 1.2e-229 793.5
Cone17ag1082 . 10 681 EXO70 exocyst subunit family AT4G31540 71.8 6.8e-289 990.3
Cone20ag0630 . 10 671 EXO70 exocyst subunit family AT4G31540 72.5 4.4e-288 987.6
Cone1ag0674 . 11 584 EXO70 exocyst subunit family AT3G55150 51.6 3.3e-160 562.8
Cone11ag1101 . 1 559 EXO70 exocyst subunit family AT3G55150 50.6 8.6e-153 538.1
Cone1ag0674 . 8 593 EXO70 exocyst subunit family AT2G39380 51.4 3.4e-165 579.3
Cone5ag1180 . 23 606 EXO70 exocyst subunit family AT2G39380 50.9 1.2e-162 570.9
Cone11ag1101 . 1 568 EXO70 exocyst subunit family AT2G39380 50.9 3.7e-156 549.3
Cone10ag0284 . 36 621 EXO70 exocyst subunit family AT3G09520 55.1 5.3e-179 625.2
Cone3ag0313 . 36 627 EXO70 exocyst subunit family AT3G09520 56.0 5.8e-178 621.7
Cone13ag1312 . 49 611 EXO70 exocyst subunit family AT3G09520 55.4 5.8e-170 595.1
Cone19ag1300 . 49 613 EXO70 exocyst subunit family AT3G09520 54.3 1.8e-166 583.6
Cone1ag0674 . 2 592 EXO70 exocyst subunit family AT5G59730 50.4 1.5e-160 563.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74