Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0216 ATGACAGGAGAAGAGAGTCCGAGGAGTCCAGAGGCAAAGGTAGGGATGCAGGTGGAGGATCTGTGGGATGTACAAGAGCCGCAGCTTTCACCGACGGAGAAGCTTAATGCTTGTTTCGAGAGCGTTCCGGTTTCCGCTTTTCCTCCTGCTCCTTCTGATCAAGTGATTGAGATAAAATCCGACACCAGTTTAGCTGAAGCTGTTCAAATATTGGCTCAGCACAAAATTCTTAGCGCACCTGTTGTAGACGTTGATGCACCTGAAGATGCTACTTGGATGGACAGATACATTGGTATCGTTGAGTTTGCAGGAATTGTTGTTTGGATTCTTCATCAGTCTGAACCTTCTTCACCGAGGAGTCCAAATAATGGAACTGCTCTAGCTGTAGCAGCTAATGGATTGGCTTCTGCTTTTGATCTTGTGAGCTTAGACTCAGGATCTGCTGCTGCGACATCCGGAAATTTTTTTGAGGCTCTAACTTCTTCAGAGTTGTATAAAAGTACAAAGGTGCGGGATATTTCAGGGTCGTTTCGCTGGGCCCCATTTCTTGCTTTGGAAAAATCCAACTCGTTTTTGACCATGCTCTTGCTGCTTTCAAAGTATAGAATGAAGAGCATTCCGCTGGTTGAGTTGGGTGAGGGAAAGATTGATAACATCATCACACAATCAGCTGTTATTCATATGCTAGCAGAATGTGCCGGGCTTCAATGGTTCGAAAGTTGGGGAAGGAAAAAAATCTCCGAAATCGGTCTACCTGTTATGACAGCTAATCATATTGTCAAGGTGTATGAAGATGAGCCAGTGCTTCAAGCATTCAAATTGATGAGGAAAAAGAGGATCGGAGGTGTACCTGTAATTGAAAATGGTGGGAACAAGGCAGTTGGTAATATAAGCTTGAGAGATATTCAGTTCTTGCTCACTGCACCAGAGATCTACCACGATTATAGATCTATAACTGCGAAGAATTTCCTGACAGCGGTTAAAACCTACTTAGAGAAGCATAAAGAGCTCTCCCCCATGACATCAGGAATGATTACATGTAAGAAGAATCACACAGTCAAAGATTTGATAGCAACACTAGACTCAAAGAAGATTCACCGAATTTACGTTGTAGATGAGGATGGAAATCTGGAAGGAGTTATTACACTAAGAGACATCATCTCAAAGCTAGTACATGAACCTCGAGGCTACTTTGGGGATTTCTTCGATGGAGTCCTTCCATTGCCGCAAAACAGCCGGGTATGA 1245 43.53 MTGEESPRSPEAKVGMQVEDLWDVQEPQLSPTEKLNACFESVPVSAFPPAPSDQVIEIKSDTSLAEAVQILAQHKILSAPVVDVDAPEDATWMDRYIGIVEFAGIVVWILHQSEPSSPRSPNNGTALAVAANGLASAFDLVSLDSGSAAATSGNFFEALTSSELYKSTKVRDISGSFRWAPFLALEKSNSFLTMLLLLSKYRMKSIPLVELGEGKIDNIITQSAVIHMLAECAGLQWFESWGRKKISEIGLPVMTANHIVKVYEDEPVLQAFKLMRKKRIGGVPVIENGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVKTYLEKHKELSPMTSGMITCKKNHTVKDLIATLDSKKIHRIYVVDEDGNLEGVITLRDIISKLVHEPRGYFGDFFDGVLPLPQNSRV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1399045 1402679 - Conep13aG0022100.1 Cone13ag0216 450603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0216 414 SMART cbs_1 258 307 IPR000644 -
Cone13ag0216 414 SMART cbs_1 343 391 IPR000644 -
Cone13ag0216 414 SMART cbs_1 54 110 IPR000644 -
Cone13ag0216 414 SMART cbs_1 181 230 IPR000644 -
Cone13ag0216 414 CDD CBS_pair_SF 258 387 - -
Cone13ag0216 414 ProSiteProfiles CBS domain profile. 254 315 IPR000644 -
Cone13ag0216 414 Pfam CBS domain 336 391 IPR000644 -
Cone13ag0216 414 Pfam CBS domain 254 302 IPR000644 -
Cone13ag0216 414 Pfam CBS domain 51 85 IPR000644 -
Cone13ag0216 414 Gene3D - 34 236 IPR046342 -
Cone13ag0216 414 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 35 393 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cone13ag0216 414 Gene3D - 242 393 IPR046342 -
Cone13ag0216 414 ProSiteProfiles CBS domain profile. 51 116 IPR000644 -
Cone13ag0216 414 SUPERFAMILY CBS-domain pair 243 400 IPR046342 -
Cone13ag0216 414 SUPERFAMILY CBS-domain pair 27 230 IPR046342 -
Cone13ag0216 414 ProSiteProfiles CBS domain profile. 340 398 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0216 Cone-Chr13:1399045 Cone16ag0637 Cone-Chr16:7944201 9.72E-06 dispersed
Cone19ag0967 Cone-Chr19:7344339 Cone13ag0216 Cone-Chr13:1399045 2.63E-88 transposed
Cone13ag0216 Cone-Chr13:1399045 Cone19ag0205 Cone-Chr19:1298670 4.56E-215 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43