Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0223 ATGGCGGCGCCTACTTCTCTAAATACTTCCTCCTTCTCCTCCACCTCTTCTCCTCCTCTCCATTCCTCTTCCAAATCCACCAGAAAGCCTCCCTTCCGATTACATTTCCCATTCTCCTCATCTCTCCACCATTCCCCCTCCCGCCGCATCTCAAACTCTTTCTCTAACTCTAGTCCTACTCCCGTTCCCAAACCTTCCTCCACCTCCGCCTCCGCTCTCCCCACCATTACCTCCTCCGCAGAGGCACCGACAGCCATTTTCTCCTCCCCCTCTGAAACTTTCATTTCCCGATTTGCCCCTGACCAGCGTCGAAAAGGCGCTGATGTCCTTGTGGAAGCTCTCGAGCGTCAAGGAGTCACAGACGTCTTTGCTTATCCTGGAGGAGCGTCTATGGAGATCCACCAAGCGCTCACTCGCTCCAACATAATCAGAAACGTTCTTCCTCGCCATGAACAGGGGGGAGTCTTTGCTGCTGAGGGATATGCTCGATCCTCTGGCCGGCCTGGTGTCTGCATTGCTACTTCCGGCCCTGGAGCTACCAATCTGGTGAGTGGCCTTGCTGATGCTCTTCTAGATAGTGTCCCTATGATTGCGATTACTGGACAAGTGCCTAGAAGAATAATTGGTACTGATGCATTTCAAGAAACTCCTATCGTTGAGGTAACTCGATCTATCACCAAGCATAATTATCTGGTTCTTGATGTTGAAGATATTCCTAGGATTGTTAGGGAAGCATTTTTCTTAGCTACCTCTGGTCGACCTGGTCCGGTTTTGATCGATATTCCTAAAGATGTTCAGCAACAGCTTGTGGTTCCTAACTGGGACCTAGCGATTGAGTTGCCTGGGTATATGTCTAGGTTGCCTAAAGCGCCTGGGGAGGCTCATTTGGAACAGATTGTTAGGTTGATTTCTGAATCGAAGAAACCAGTTCTGTATGTTGGTGGAGGATGTTTGAACTCTAGCGAGGAGTTGAGGCTGTTTGTTCAGCTTACGGGGATTCCAGTTGCTAGTACTTTGATGGGTCTTGGAGCTTTTCCTTGCCCGGATGAGCTGTCTCTTCAAATGCTTGGAATGCATGGAACTGTTTATGCTAATTATGCGGTGGATAAGAGTGACTTGTTACTTGCTTTTGGAGTTAGATTTGATGACCGTGTGACGGGAAAACTCGAAGCTTTTGCTAGCCGTGCAAAAATCATTCATATTGATATTGATTCGGCTGAAATTGGGAAGAACAAGCAGCCCCATGTATCGGTTTGTGCGGATGTGAAGTTGGCATTGAAGGGAATGAATAAGACAATGGAACAGAAATCAACAAAGTTCGATTTTTCGTCATGGAGGGAGGAGCTGAATGAGCAAAAAGTGAAATTCCCTTTGAGTTTTAAGACTTTTGATGAAGCTATCCCTCCTCAATATGCAATTCAGGTTCTCGATGAATTGACAAACGGAGATGCGATTATTAGTACGGGTGTTGGGCAGCATCAAATGTGGGCAGCTCAGTTTTATAAGTACAAGAGGCCTCGTCAATGGTTGACTTCGGGCGGTTTAGGGGCAATGGGTTTCGGGTTGCCTGCTGCTATTGGAGCCGCCGTTGCTAATCCGGATGTGGTAGTTGTTGATATTGATGGAGATGGAAGTTTTATCATGAATGTTCAAGAGCTGGCAACTATTCGAGTGGAGAATCTACCTGTTAAAGTACTGTTGCTGAATAACCAGCATTTAGGAATGGTTGTGCAATGGGAGGATCGATTCTACAAGGCGAATAGGGCTCATACATATCTAGGAAATCCAGAAAATGAGTCTGAAATTTTCCCGAATATGTTGAAGTTTGCAGATGCTTGTGGAATTCCTGCTGTCCGGGTGACAAAGAAGAGTGAGCTTAGAGCAGCAATCCAGAAAATGCTGGACACTCCTGGTCCATATCTCTTGGATGTGATTGTACCCCACCAAGAGCATGTTTTGCCAATGATTCCAAGTGGTGGAGCTTTCAAAGATGTGATCACTGAGGGTGATGGAAGAACAAGTTACTAA 2028 46.6 MAAPTSLNTSSFSSTSSPPLHSSSKSTRKPPFRLHFPFSSSLHHSPSRRISNSFSNSSPTPVPKPSSTSASALPTITSSAEAPTAIFSSPSETFISRFAPDQRRKGADVLVEALERQGVTDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARSSGRPGVCIATSGPGATNLVSGLADALLDSVPMIAITGQVPRRIIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVREAFFLATSGRPGPVLIDIPKDVQQQLVVPNWDLAIELPGYMSRLPKAPGEAHLEQIVRLISESKKPVLYVGGGCLNSSEELRLFVQLTGIPVASTLMGLGAFPCPDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIIHIDIDSAEIGKNKQPHVSVCADVKLALKGMNKTMEQKSTKFDFSSWREELNEQKVKFPLSFKTFDEAIPPQYAIQVLDELTNGDAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPDVVVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIFPNMLKFADACGIPAVRVTKKSELRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRTSY 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1456599 1464385 - Conep13aG0022900.1 Cone13ag0223 450610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0223 675 CDD TPP_AHAS 467 659 IPR039368 GO:0030976(InterPro)
Cone13ag0223 675 CDD TPP_PYR_POX_like 108 263 - -
Cone13ag0223 675 ProSitePatterns Thiamine pyrophosphate enzymes signature. 526 545 IPR000399 GO:0000287(InterPro)|GO:0030976(InterPro)
Cone13ag0223 675 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 105 216 IPR012001 GO:0030976(InterPro)
Cone13ag0223 675 MobiDBLite consensus disorder prediction 1 75 - -
Cone13ag0223 675 MobiDBLite consensus disorder prediction 1 29 - -
Cone13ag0223 675 NCBIfam biosynthetic-type acetolactate synthase large subunit 105 667 IPR012846 GO:0000287(InterPro)|GO:0003984(InterPro)|GO:0009082(InterPro)|GO:0030976(InterPro)|GO:0050660(InterPro)
Cone13ag0223 675 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 467 668 IPR029061 -
Cone13ag0223 675 MobiDBLite consensus disorder prediction 40 75 - -
Cone13ag0223 675 FunFam Acetolactate synthase, mitochondrial 457 673 - -
Cone13ag0223 675 Gene3D - 93 287 - -
Cone13ag0223 675 SUPERFAMILY DHS-like NAD/FAD-binding domain 293 457 IPR029035 -
Cone13ag0223 675 Gene3D - 296 458 - -
Cone13ag0223 675 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 489 644 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Cone13ag0223 675 Gene3D - 459 645 - -
Cone13ag0223 675 FunFam Acetolactate synthase 289 458 - -
Cone13ag0223 675 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 102 663 IPR045229 GO:0003984(PANTHER)|GO:0005948(PANTHER)|GO:0009097(PANTHER)|GO:0009099(PANTHER)|GO:0050660(PANTHER)
Cone13ag0223 675 FunFam Acetolactate synthase 99 282 - -
Cone13ag0223 675 Pfam Thiamine pyrophosphate enzyme, central domain 296 427 IPR012000 GO:0000287(InterPro)|GO:0030976(InterPro)
Cone13ag0223 675 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 98 280 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0223 K01652 - - cit:102614857 1066.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0223 Cone-Chr13:1456599 Cone19ag0210 Cone-Chr19:1331461 0 dispersed
Cone13ag0223 Cone-Chr13:1456599 Cone18ag1194 Cone-Chr18:8527605 1.44E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36