Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0228 ATGGAGAACAACCGGCAAGCCCAATCCTCCTCTTATCCTCCCGCACAACCCGTTGGTCCTCCTGCTCCTCCATTCCACCACCTCCTCCAGCAACAGCAGCAGCAGCTCCAGATGTTCTGGTCCTATCAGCGGCAAGAAATCGAATCCGTCAACGATTTCAAGAACCACCAGCTCCCTCTCGCTCGAATCAAGAAGATCATGAAGGCCGACGAAGACGTGCGCATGATCTCGGCCGAAGCTCCGATTCTGTTCGCTAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCATGGCTCCACGCGGAGGAGAACAAGAGGCGCACCTTGCAGAAGAACGACATAGCGGCGGCGATTACGAGGACTGATATCTTTGATTTTTTGGTTGATATTGTGCCGAGAGATGAGATCAAGGATGAGGCTGGGTTAGGGGGGATTGTAGGGGCTACGGCGAGTGGAGTTCCGTACTATTACCCGCCGATGGGGCAACCTGCCGGAGCTCCCGGAGGTATGATGATCGGACGTCCGGCGGTTGATCCGACTGGTGTGTACGTGCAACCTCCGTCTCAGGCTTGGCAGTCTGTATGGCAGACGGCGGCTGAAGATGGGTCGTATGGGAGTGGAGGGAACACTGGTCAGGGTAATCTTGATGGCCAAAGTTAA 666 55.41 MENNRQAQSSSYPPAQPVGPPAPPFHHLLQQQQQQLQMFWSYQRQEIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGIVGATASGVPYYYPPMGQPAGAPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTAAEDGSYGSGGNTGQGNLDGQS 221
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 1485636 1488400 - Conep13aG0023400.1 Cone13ag0228 450615
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0228 221 Pfam Core histone H2A/H2B/H3/H4 31 120 IPR007125 GO:0003677(InterPro)
Cone13ag0228 221 SUPERFAMILY Histone-fold 23 129 IPR009072 GO:0046982(InterPro)
Cone13ag0228 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 141 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone13ag0228 221 Gene3D Histone, subunit A 25 135 IPR009072 GO:0046982(InterPro)
Cone13ag0228 221 MobiDBLite consensus disorder prediction 198 221 - -
Cone13ag0228 221 FunFam Nuclear transcription factor Y subunit gamma 26 135 - -
Cone13ag0228 221 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0228 Cone-Chr13:1485636 Cone3ag1500 Cone-Chr3:33585649 2.87E-69 dispersed
Cone6ag0767 Cone-Chr6:3911492 Cone13ag0228 Cone-Chr13:1485636 1.00E-29 transposed
Cone13ag0228 Cone-Chr13:1485636 Cone19ag0213 Cone-Chr19:1343629 5.08E-133 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44580 PF14432 DYW_deaminase 3.40E-37 CL0109 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0228 - - - 0.0