Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag0228 | ATGGAGAACAACCGGCAAGCCCAATCCTCCTCTTATCCTCCCGCACAACCCGTTGGTCCTCCTGCTCCTCCATTCCACCACCTCCTCCAGCAACAGCAGCAGCAGCTCCAGATGTTCTGGTCCTATCAGCGGCAAGAAATCGAATCCGTCAACGATTTCAAGAACCACCAGCTCCCTCTCGCTCGAATCAAGAAGATCATGAAGGCCGACGAAGACGTGCGCATGATCTCGGCCGAAGCTCCGATTCTGTTCGCTAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCATGGCTCCACGCGGAGGAGAACAAGAGGCGCACCTTGCAGAAGAACGACATAGCGGCGGCGATTACGAGGACTGATATCTTTGATTTTTTGGTTGATATTGTGCCGAGAGATGAGATCAAGGATGAGGCTGGGTTAGGGGGGATTGTAGGGGCTACGGCGAGTGGAGTTCCGTACTATTACCCGCCGATGGGGCAACCTGCCGGAGCTCCCGGAGGTATGATGATCGGACGTCCGGCGGTTGATCCGACTGGTGTGTACGTGCAACCTCCGTCTCAGGCTTGGCAGTCTGTATGGCAGACGGCGGCTGAAGATGGGTCGTATGGGAGTGGAGGGAACACTGGTCAGGGTAATCTTGATGGCCAAAGTTAA | 666 | 55.41 | MENNRQAQSSSYPPAQPVGPPAPPFHHLLQQQQQQLQMFWSYQRQEIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGIVGATASGVPYYYPPMGQPAGAPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTAAEDGSYGSGGNTGQGNLDGQS | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1485636 | 1488400 | - | Conep13aG0023400.1 | Cone13ag0228 | 450615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag0228 | 221 | Pfam | Core histone H2A/H2B/H3/H4 | 31 | 120 | IPR007125 | GO:0003677(InterPro) | |
Cone13ag0228 | 221 | SUPERFAMILY | Histone-fold | 23 | 129 | IPR009072 | GO:0046982(InterPro) | |
Cone13ag0228 | 221 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 33 | 141 | IPR050568 | GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Cone13ag0228 | 221 | Gene3D | Histone, subunit A | 25 | 135 | IPR009072 | GO:0046982(InterPro) | |
Cone13ag0228 | 221 | MobiDBLite | consensus disorder prediction | 198 | 221 | - | - | |
Cone13ag0228 | 221 | FunFam | Nuclear transcription factor Y subunit gamma | 26 | 135 | - | - | |
Cone13ag0228 | 221 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0228 | Cone-Chr13:1485636 | Cone3ag1500 | Cone-Chr3:33585649 | 2.87E-69 | dispersed | |
Cone6ag0767 | Cone-Chr6:3911492 | Cone13ag0228 | Cone-Chr13:1485636 | 1.00E-29 | transposed | |
Cone13ag0228 | Cone-Chr13:1485636 | Cone19ag0213 | Cone-Chr19:1343629 | 5.08E-133 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44580 | PF14432 | DYW_deaminase | 3.40E-37 | CL0109 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag0228 | - | - | - | 0.0 |