Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0239 ATGGATCCTCGTTTGAAGGAGCTTGTCGAGGCTTCTTCTTTGCCTGCTTCTCATCCTCTTATTCAGCTTAGTAGCAGTAGCGATTCCGACTCCGACTCCGACGACGATTCCGATGATTCCGACCAGGGAGAAAACGATGGCGTTTTGGGAGATATTGGAGGGAGTAGAGCGGGAAGTTCTAACCAAATTCACGGAACTTCATCGAAGAAGAGGAGGATTGATGATTGGGGAGTGGTTTTGCCGGTTGGATTTCTACAGCCTCTCCCCTTGGAGGATACGCCGGCAGGAGCGGAGCATTTTTCTGCGGTTGTTGATACGCCGGAGGTAATCGCTGCTCTGCCTGCGCCGGGTTCGTTAATTCAGCGAAATGTAAAGGGTGAGAATCGTTGTGTGAGCTTGAACCGCTCTGGCTGCAAACAATTTTGGAAAGCTGGAGACTATGAGGGAGCTCCGTCTGTTGATTGGGATATATCTTCAGGTGGCATGGACCATGTCAGGGTTCATCCTAAGTTTCTTCATTCCAATGCAACCAGTCACAAGTGGGCCCTTGGAGCATTTGCTGAGCTTTTGGACAATGCATTGGATGAGGTTTGCAACGGTGCTACTTATGTAAATGTTGATATGCTTGTGAACAAGAAAGATGGAAGCAAAATGTTGCTAGTTGAAGATAATGGTGGTGGAATGGATCCTGATAAAATGCGTCAGTGCATGTCATTGGGTTATTCTGCAAAAAGCAAAGTAGCAAACACTATCGGACAGTATGGAAATGGTTTTAAGACAAGTACCATGAGGCTTGGTGCAGATGTTATAGTGTTCTCACGTTGTTGTGGGCAAAATGGAAAAGGCCCCACGCAGAGCATTGGGTTATTGTCCTACACATTTTTGCGGAACACTGGGAAGGAAGATATTGTGGTTCCCATGCTTGATTATAAGAGAAGAGGAGCAGGATGGGGCAATATAATACGATCTTCACCTGAAGATTGGGATAAAAATGTGGAAACAATGGTTCAGTGGTCTCCATTTTCCAGTGAAGCAGAGCTTCTTTCTCAGTTCAATCTGTTGAAAGAGCAAGGCACCCGTATAATCATATACAACCTTTGGGAAGATGATCAAGGACTGCTGGAGCTTGATTTTAACATCGATCCACATGACATTCAAATCAGAGGTGTCAACCGGGATGAGAAAAATGTACAAATGGCTAAACAGTTTCCCAACTCTAGACACTTTTTGACTTATCGACATTCATTGAGGAGCTACACGTCGATTTTGTATTTAAGGCTGCCCCCTGGCTTTCGCATTATTCTTCGTGGGAGGGATGTTGAACACCACAATATAGTTAATGATATGATGATGTCCGAAGAGGTCACGTACCGACCGAAGGATGCAAACAATACAAATGTGGTTGCTGTAGTGACTCTTGGGTTTGTCAAGGATGCAAAACATCATATTGATGTGCAGGGGTTCAACGTTTATCATAAGAATCGACTTATTAAGCCGTTTTGGAGGCTCTGGAATGCTGCTGGAAGTGATGGTCGTGGTGTTATAGGTGTCTTAGAAGCAAATTTTGTCGAACCAGCGCATGATAAGCAGGGTTTTGAGCGTACAACTGTTCTTTCAAGGCTTGAAGCAAAGCTAATCCAAATGCAGAAGAATTATTGGTGTTCCAAATGTCACAAAATAGGCTATGCTCCTCGTCGCAATAAGAAAGCTATTCAAGAATCTCGGGATAGAGGCTCCTCTCCTGATGACCGTACACAAAAATCGCCTCCATCTAGAAAAGATCGTCCAGCTGCTAGTGGGAAGAAATCAGACAAGTTTACTTCAGGAAAAGAAAGTTTACAAAAAACAGTGGATCGTGGATATCTGAATGGTCATGGTTCTGGAATAAATGATGATATTGGTACCCCCCCCGGGATACGAGTAAATGGTAATAGCAGTAAAACATTCACTGCTAATAGATCTCTTGGGAAAGAGAAAGTGTATACAACTCGATCTTCACATCAGGATGACTCTGAACCCGAGCTAGATAAAACAGGTGGAAGAACCACTCGGCCTCGCACTCAAAGCCAACCAAAGGCAGACAATATTGATGAGCAGGAGTGTTCTCTTTCATCTTCTGATTTACGAATTCTACAGGAGTTGAAAGAGGAGAATATTGAACTGAAGAAGAGATTAGAGAGGAAGGATGAGGCTTTAGGTGAGTTACAACATAACTGGCAACTCGAAAAAGACACATGCAAATCACTTGAAACCCAGTTAAAAGCAGCACAGGAAGAAATTGGTGGACTAAACAGAGAACAAGAAACCCTAATTAATATATTCTCAGAGGAGAGGGAAAGACGAGACAACGAGGAGAAAAATCTGAGAAAGAAGCTACAGGAGGCATCTAACGCCATCCAGGAGCTGTTAGACAAAGTTAGGCTTCTTGAAAGCAGACCAAATAGCCAACGGTAA 2454 43.77 MDPRLKELVEASSLPASHPLIQLSSSSDSDSDSDDDSDDSDQGENDGVLGDIGGSRAGSSNQIHGTSSKKRRIDDWGVVLPVGFLQPLPLEDTPAGAEHFSAVVDTPEVIAALPAPGSLIQRNVKGENRCVSLNRSGCKQFWKAGDYEGAPSVDWDISSGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVCNGATYVNVDMLVNKKDGSKMLLVEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCCGQNGKGPTQSIGLLSYTFLRNTGKEDIVVPMLDYKRRGAGWGNIIRSSPEDWDKNVETMVQWSPFSSEAELLSQFNLLKEQGTRIIIYNLWEDDQGLLELDFNIDPHDIQIRGVNRDEKNVQMAKQFPNSRHFLTYRHSLRSYTSILYLRLPPGFRIILRGRDVEHHNIVNDMMMSEEVTYRPKDANNTNVVAVVTLGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLSRLEAKLIQMQKNYWCSKCHKIGYAPRRNKKAIQESRDRGSSPDDRTQKSPPSRKDRPAASGKKSDKFTSGKESLQKTVDRGYLNGHGSGINDDIGTPPGIRVNGNSSKTFTANRSLGKEKVYTTRSSHQDDSEPELDKTGGRTTRPRTQSQPKADNIDEQECSLSSSDLRILQELKEENIELKKRLERKDEALGELQHNWQLEKDTCKSLETQLKAAQEEIGGLNREQETLINIFSEERERRDNEEKNLRKKLQEASNAIQELLDKVRLLESRPNSQR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1589170 1603122 + Conep13aG0024900.1 Cone13ag0239 450626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0239 817 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 184 366 IPR036890 -
Cone13ag0239 817 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 184 280 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 566 612 - -
Cone13ag0239 817 Pfam Morc6 ribosomal protein S5 domain 2-like 414 553 IPR041006 -
Cone13ag0239 817 Gene3D - 169 365 IPR036890 -
Cone13ag0239 817 Coils Coil 708 812 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 1 69 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 29 45 - -
Cone13ag0239 817 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 82 811 IPR045261 GO:0005634(PANTHER)|GO:0016887(InterPro)
Cone13ag0239 817 MobiDBLite consensus disorder prediction 682 702 - -
Cone13ag0239 817 FunFam MORC family CW-type zinc finger protein 4 168 372 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 639 659 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 660 681 - -
Cone13ag0239 817 MobiDBLite consensus disorder prediction 565 702 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0239 K24135 - - csv:101222073 936.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0239 Cone-Chr13:1589170 Cone19ag0149 Cone-Chr19:820877 2.84E-138 dispersed
Cone13ag0239 Cone-Chr13:1589170 Cone16ag0091 Cone-Chr16:494670 3.59E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54