Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0248 ATGGGGTGCGTTCTCAGCACACGAGCTACTGGAGATCGCCGGATCACTGCCGGAGCTGTGAATCGTCGCCGCAGCATAGAGGATTCTTCTGGTTCCAGAGATGCTGGCGGTGTTGGGGTTACGAAGGAGGTGATAGAAAAGGAGAGGCAACAAAGGAGCGGGAAACCGGGGGATATCCCGGCGGAAGTGCGCCGGAAAGCCAGGCTGGATCCTTGCTCGAGGAACGAGCAAGGTTGGCCTTCCTGGCTGTTGGCGGTTGCCGGCGATGTCATCCAAGGTTGGACTCCCCGGCGAGCAAACACCTTCGAGAAGCTTGCCAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCTAGGGACCTTGTCACTGGAAAAATTGTTGCGTTGAAGAAGGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAATTTATGGCTAGAGAGATTCTCGTGCTCAGACGACTTGATCATCCCAATATTGTTAAGCTTGAAGGTCTTGTTACTTCTAGAATGTCTTGTAGTCTTTACCTAGTTTTCGAGTATATGGAACATGATCTATCTGGCCTTTCTGCTGGCCAAGGCGTCAAGTTCACTGAGCCTCAGGTCAAATGCTTCATGAAGCAACTATTGTCTGGGCTTGAGCATTGCCACAAACAAGGTGTCTTGCACCGAGATATAAAGGGCTCCAATCTTCTAATTGACAATGAAGGAATTCTTAAAATAGCTGATTTTGGATTAGCTACTTTTTATGATCCTGCACAACGACAACCCATGACGAGTAGAGTTGTCACGCTTTGGTACCGCCCCCCTGAACTTCTTCTTGGGGCTACGTTATATGATATTACTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCCGAGTTGCTTGCTGGAAAGCCAATTATGCCCGGTAGAACAGAGGTTGAACAACTGCATAAGATATTTAAATTATGTGGCTCCCCGTCTGATGAATACTGGAAGAAATACAAATTACCAAATGCCACGCTTTTTAGACCGCAACAACCATACAAGCGCTGCATAGCAGAAACCTTCAAGGACTTTCCATCTTCTTCTCTAGATCTGGTTGAAACTCTTCTTTCGATAGACCCTGCTCAGCGAGGCACTGCTACTACTGCTTTGAATAGTGAATTCTTTACGACCGAGCCTTATGCTTGTGAACCATCAAGTTTACCCAAGTATCCTCCTAGCAAAGAAATGGATGTAAAATTAAGAGATGAAGAAGCACGAAGGCTAAAGGGTCTAAGTGGAAAATCCACGGCTGTTGATGGTACAAGGAGAGGAAGAGCTCGTGATCGGATTGGTCAGGCAATTCCAGCTCCAGAAGCCAATGCAGAGAATCAAGTAAACCTAGATAGATGGAGACTAGTGACACAAGCAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCACCTCATCAAGATGGAGGTGTCGGACACCCACAAGATAAATCACATCCGGCCCCAGTATCTTTCGGGGCCAACGATACTTTCAGCTCTTCGTTTTTCGATTCCAAGACCGGATCTGTTAAAAGCATGGGAGCTTCTGTGGGGCCATCCTCACGTAGAGGGAAAACCAATAGAGACGATAATCCCTGGACGGTGGGCCCATCTCAGAAATTCATCCACGCATTGAAGCCTGAAATAGGGCTATCCATGAATCTGTTATTTAAGGGTAAATAA 1704 46.65 MGCVLSTRATGDRRITAGAVNRRRSIEDSSGSRDAGGVGVTKEVIEKERQQRSGKPGDIPAEVRRKARLDPCSRNEQGWPSWLLAVAGDVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNIVKLEGLVTSRMSCSLYLVFEYMEHDLSGLSAGQGVKFTEPQVKCFMKQLLSGLEHCHKQGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPAQRQPMTSRVVTLWYRPPELLLGATLYDITIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKYKLPNATLFRPQQPYKRCIAETFKDFPSSSLDLVETLLSIDPAQRGTATTALNSEFFTTEPYACEPSSLPKYPPSKEMDVKLRDEEARRLKGLSGKSTAVDGTRRGRARDRIGQAIPAPEANAENQVNLDRWRLVTQANAKSKSEKFPPPHQDGGVGHPQDKSHPAPVSFGANDTFSSSFFDSKTGSVKSMGASVGPSSRRGKTNRDDNPWTVGPSQKFIHALKPEIGLSMNLLFKGK 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1682016 1688851 - Conep13aG0025900.1 Cone13ag0248 450635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0248 567 SUPERFAMILY Protein kinase-like (PK-like) 95 391 IPR011009 -
Cone13ag0248 567 Gene3D Phosphorylase Kinase; domain 1 89 184 - -
Cone13ag0248 567 MobiDBLite consensus disorder prediction 40 62 - -
Cone13ag0248 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag0248 567 MobiDBLite consensus disorder prediction 467 545 - -
Cone13ag0248 567 CDD STKc_CDK9_like 102 386 - -
Cone13ag0248 567 MobiDBLite consensus disorder prediction 499 529 - -
Cone13ag0248 567 Pfam Protein kinase domain 102 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0248 567 SMART serkin_6 102 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag0248 567 MobiDBLite consensus disorder prediction 20 62 - -
Cone13ag0248 567 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524(InterPro)
Cone13ag0248 567 FunFam probable serine/threonine-protein kinase At1g54610 185 426 - -
Cone13ag0248 567 PANTHER CELL DIVISION PROTEIN KINASE 101 386 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone13ag0248 567 Gene3D Transferase(Phosphotransferase) domain 1 185 423 - -
Cone13ag0248 567 FunFam probable serine/threonine-protein kinase At1g54610 89 184 - -
Cone13ag0248 567 ProSiteProfiles Protein kinase domain profile. 102 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0248 Cone-Chr13:1682016 Cone4ag0174 Cone-Chr4:812123 1.92E-241 dispersed
Cone13ag0248 Cone-Chr13:1682016 Cone19ag0228 Cone-Chr19:1478009 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82006 PF07002 Copine 6.20E-76 CL0128 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0248 K08819 - mdm:103428263 847.425