Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0250 ATGAAAGAAGATGTAGCGGCGGAAAATGATCCTATTACTCTCTCGGTCCACCTTCTCTCTTCTCTCCTCGACGAAGAAATCCCTCACATTCAATGCTTTAAAGGTAAATGGTCCATTATCACTACCAAACTCTCCGATCTCAGAACTCAACTCTCCGATTTCTCTGACTTCCCTACCTCTTTATCCAACTATCTCTCCCTCGACCTCCTCAACTCCGTTTCCGAATCCCTCCACGACGCCGTTTCTCTAGCCAGAACTTGTCGTACGAGCAGTCTCTCCGCTGGAAAGCTAAAAACTCAGAGTGATATTGACTCTGTCATCGCTAAGCTTGATAGGATTCTTCGAGACGGAGAAATATTAATAAGGAGTGGAGTTCTTCAAGATGGCGCTGTTTCTTCTAGTTCGAAGAGGGAAGCTGTTCGAGCTGAGTCGAGAAACTTGATCACTCGGTTGCAGATCGGAACTACCGAGGCCAAGCACTCGGCCATGGATTCCCTGATAGGGCTTCTCGAACAAGATGATAAGAACGTGATGATCGCCGTAGCTCAAGGTATCGTTCCAGTGCTAGTTCGATTACTCGATTCAAGCTCTTACGAAATGAAGGAGAAATCCGTTGCTGCAATTTCTAGGGTTTCCATGATGGATTCGAGTAAGCACGTTTTAGTTGCTGAAGGATTGTTGCTATTGAATCATTTAGTTAGGGTTTTAGATTCAGGGAGTTGTTTTGCTAAGGAGAAAGCCTGCATAGCTCTCCAATCTCTGAGTTTTTCAAAAGAGAACGCTAGAACGATTGGATCAAGAGGTGGAATTTCATCTCTGTTAGAAATTTGCCAATCAGGAACTCCAGTTTCCCAATCCTCTGCTGCTGGAGTGCTCAGAAATCTAGCCGGATTTAGTGAAACCAAAGAGAATTTCATCGAAGAAAATGGGGTTATTGTCCTTTTAGGACTTTTAGCTTCAGGCACTTCATTAGCTCAAGAAAATGCGATTGGTTGTTTGTGTAATTTAGTTGCAGAAGATGATAACATGAAGCTCTTGATCGGCAAAGAAGGTGGGATTGAGTTAATGAAGAATTTCTGGGATGTGGGCCCCACGGGTAGAAGTCTAGAGGTTGCTGTCGAGTTATTGAGGCACTTAGCTTCTTACCCTCCTATAGCAGACGTACTTGTTTCTGATGGATTTATCGCCCGGATTTTCACGGTATTGAATTCTGGAGTTTTAGGGGTGAGAGTTGAAGCTGCTCGGGCTGTTTATGAGCTTGGATTTTGCACTAAAACTAGGAAAGATATAGGTGATTGTGGATGTATTCATCCCTTGATTAAAATGTTAGATGGTAAGGCTACTGAAGAGAAAGAAGCAGCTGCAAAAGCCTTGTCGGCTCTAATGTTATACACTGGAAATAGGAGGATTTTTCGTAAAGATGAAACAGGGATAGTTAATGTGGTTCAACTTTTAGACACTTCTATTCAGAATTTGGATAAGAAGTACCCTGTTTCTGTACTGGCATCACTTGTTCATTCCAAAAAGTGTAGGAGACAGATAGTTGCAGCAGGTGCCTGTTTGCATTTGCAAAAACTTGTTGAACTTGATGTTGAAGGTTCTAGAAAGCTCTTGGAGGGCCTTGGCCGGAGTAAGATATGGGGCATTTTTTCCAGACCTTAG 1662 43.08 MKEDVAAENDPITLSVHLLSSLLDEEIPHIQCFKGKWSIITTKLSDLRTQLSDFSDFPTSLSNYLSLDLLNSVSESLHDAVSLARTCRTSSLSAGKLKTQSDIDSVIAKLDRILRDGEILIRSGVLQDGAVSSSSKREAVRAESRNLITRLQIGTTEAKHSAMDSLIGLLEQDDKNVMIAVAQGIVPVLVRLLDSSSYEMKEKSVAAISRVSMMDSSKHVLVAEGLLLLNHLVRVLDSGSCFAKEKACIALQSLSFSKENARTIGSRGGISSLLEICQSGTPVSQSSAAGVLRNLAGFSETKENFIEENGVIVLLGLLASGTSLAQENAIGCLCNLVAEDDNMKLLIGKEGGIELMKNFWDVGPTGRSLEVAVELLRHLASYPPIADVLVSDGFIARIFTVLNSGVLGVRVEAARAVYELGFCTKTRKDIGDCGCIHPLIKMLDGKATEEKEAAAKALSALMLYTGNRRIFRKDETGIVNVVQLLDTSIQNLDKKYPVSVLASLVHSKKCRRQIVAAGACLHLQKLVELDVEGSRKLLEGLGRSKIWGIFSRP 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1706730 1708762 - Conep13aG0026100.1 Cone13ag0250 450637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0250 553 SUPERFAMILY ARM repeat 146 489 IPR016024 -
Cone13ag0250 553 Pfam Armadillo/beta-catenin-like repeat 173 210 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 Gene3D - 368 539 IPR011989 -
Cone13ag0250 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 552 - -
Cone13ag0250 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 226 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 SMART arm_5 257 297 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 SMART arm_5 298 338 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 SMART arm_5 173 213 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 Gene3D - 132 361 IPR011989 -
Cone13ag0250 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 268 310 IPR000225 GO:0005515(InterPro)
Cone13ag0250 553 Pfam Domain of unknown function (DUF7032) 16 125 IPR054296 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0250 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0250 Cone-Chr13:1706730 Cone8ag1550 Cone-Chr8:11619231 1.87E-40 dispersed
Cone13ag0250 Cone-Chr13:1706730 Cone19ag0232 Cone-Chr19:1502290 3.89E-270 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43