Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0254 ATGAAGTATTACTCTTCTAAATGGATGAAGATCAACATGGAAATAACAATGGCTCCAGTACTAATTCTTCTTCTTCTTCTTCTTCTTGAGCCTTCTTCTACTTCTTCTCATCCCGACTTGATAATTCGACTTCCCGGACAACCCAAGGTGGGCTTTCAGCATTTCTCAGGCTATGTCACAGTAGATCATAACAACCATAGAGCGCTGTTTTACTACTTTGCTGAAGCTGAATTTGACCCTTCTTCCAAGCCTCTTGTTCTATGGCTAAATGGAGGGCCTGGTTGTTCTTCTTTGGGAGTAGGAGCTTTTGCAGAAAATGGACCTTTCAGGCCAAATGGACAAGTTTTGGTGAAAAATGAATTCAGCTGGAATAAAGAGGCAAATATGTTGTATTTAGAAACCCCAGTTGGAGTTGGATTCTCTTATGCTACTAATGCTTCATCTTATGTTTCTGCTGATGATGAGTCAACAGCCGAAGACAATCTGATATTCTTGCAAAGATGGTTTAACAAGTTTCCTCAATACCGGAACCGGGATCTATATTTGGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAACTTGCAAAGCTCATGGTGGAAGCTAACCGAATAGAGAAGTACTTATTCAATCTAAAAGGAATTGCTCTAGGTAATCCAGTTTTAGAATATGCAACGGATTTGAATTCAAGGGCTGAATTCTTATGGTCCCACGGAGTAATATCGGATTCGACATTCAAGTCGTTCACTTCAACTTGCAATTATTCTCGATATGTTAGTGAATTTTATCGCGACTCAATATCGCCCGTTTGTTTGACAGTCATGAGTGAAGTCGACCGAGAAACAAGTAAATTTGTGGACAAATATGATGTTACCCTTGATGTCTGTATTCCTTCGGTACTATCTCAATCCAAGGTCTTAAGTCCCCGGCATGTAACTGAGAGAGTAGATGTTTGTATTGATGATGAAACTTCTAACTACCTTAACCGAAAAGACGTTCAAGACGCTCTCCATGCTCGGCTTGTGGGAATCCGGAAATGGACCGTTTGTAATGATGTTCTGGACTATGAGCTGCTCAACCTGGAAATACCGACGATCTCGATCGTTGGATCGCTAATCAAATCCGGAGTACGAGCCTTGATATATAGTGGAGATCAAGATTCAGTAATTCCGTTGATGGGAAGCCGGACATTGGTTCGTAGATTGGCGAAAGAGTTGGAATTAAACACAACTATTCCTTATAGAGTTTGGTTTCAAGGAAAACAGGTCAGAAAAAGGAAATCATCGGTTTTTTCATGTCATCTTTTGTGCTCCTACTACTCATAA 1326 40.65 MKYYSSKWMKINMEITMAPVLILLLLLLLEPSSTSSHPDLIIRLPGQPKVGFQHFSGYVTVDHNNHRALFYYFAEAEFDPSSKPLVLWLNGGPGCSSLGVGAFAENGPFRPNGQVLVKNEFSWNKEANMLYLETPVGVGFSYATNASSYVSADDESTAEDNLIFLQRWFNKFPQYRNRDLYLAGESYAGHYVPQLAKLMVEANRIEKYLFNLKGIALGNPVLEYATDLNSRAEFLWSHGVISDSTFKSFTSTCNYSRYVSEFYRDSISPVCLTVMSEVDRETSKFVDKYDVTLDVCIPSVLSQSKVLSPRHVTERVDVCIDDETSNYLNRKDVQDALHARLVGIRKWTVCNDVLDYELLNLEIPTISIVGSLIKSGVRALIYSGDQDSVIPLMGSRTLVRRLAKELELNTTIPYRVWFQGKQVRKRKSSVFSCHLLCSYYS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1742222 1744448 + Conep13aG0026500.1 Cone13ag0254 450641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0254 441 Gene3D - 319 355 - -
Cone13ag0254 441 Pfam Serine carboxypeptidase 45 421 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone13ag0254 441 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185(InterPro)
Cone13ag0254 441 Gene3D alpha/beta hydrolase 36 297 IPR029058 -
Cone13ag0254 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone13ag0254 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone13ag0254 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone13ag0254 441 SUPERFAMILY alpha/beta-Hydrolases 33 423 IPR029058 -
Cone13ag0254 441 Gene3D - 366 435 - -
Cone13ag0254 441 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 418 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0005773(PANTHER)|GO:0006508(InterPro)
Cone13ag0254 441 FunFam Carboxypeptidase 34 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0254 K16297 - - mdm:103454948 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0254 Cone-Chr13:1742222 Cone14ag0656 Cone-Chr14:3291606 9.06E-185 dispersed
Cone13ag0254 Cone-Chr13:1742222 Cone15ag0666 Cone-Chr15:3503525 4.95E-213 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126