Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0256 ATGGCTAGAGTTCTTGTTCAATCAACAAATATTCCTGGGTTAGTTGTTGGGCCCAAAAATGGCCTATCAAGGGGATCTGGAAACACCAAACGATCTGTCAAGATGATGAGTGGTCTACAAGTTCCAGGAATCAGGATTAGAGGCTTTTCAGGATTACGAAGTTCTAATGCTTTAGATACCCTGGTGGGGCCTAGGAAAGATTTTCATTCCTTGGTGGCTAGCACAATGTCTTCTCGGAGACGAAGGGCTAGTAGATGTGTCCCAAAGGCCATGTTTGAGCGATTCACAGAAAAGGCTATCAAAGTGATCATGCTTGCTCAAGAGGAAGCAAGACGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATCCTTTTGGGTCTTATTGGAGAAGGCACTGGTATTGCTGCAAAGGTTCTTAAATCTATGGGAATCAATCTTAAAGATGCACGTGTGGAAGTGGAGAAAATAATTGGACGGGGCAGTGGATTTGTTGCGGTAGAAATTCCTTTCACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAAGAAGCTCGTCAACTCGGTCATAATTATATTGGATCTGAGCACCTACTGCTTGGACTACTTCGTGAAGGTGAGGGTGTTGCAGCTCGGGTCCTCGAAAATTTAGGTGCTGAACCAAGTAACATTAGAACACAGGTAATTCGTATGGTGGGTGAGAGCACAGAAGCAGTTGGTGCTGGTGTTGGGGGAGGTACCAGTGGAAATAAGATGCCAACTTTGGAGGAATATGGCACAAATTTGACAAAGTTGGCAGAGGAGGGTAAGCTGGATCCTGTTGTGGGAAGACAACAACAGATCGAACGTGTAACCCAAATTTTGGGTCGGCGTACAAAGAACAATCCGTGTCTCATTGGTGAACCTGGTGTAGGGAAAACTGCAATTGCAGAGGGCCTTGCCCAAAGGATTGCAACTGGTGATGTTCCTGAAACAATAGAAGGAAAGAAGGTTATTACACTGGATATGGGACTTCTTGTTGCTGGAACAAAATACCGTGGAGAATTTGAGGAGAGGTTGAAGAAACTAATGGAGGAAATAAAACAAAGTGATGAGATAATACTTTTTATAGATGAAGTGCACACATTAATAGGAGCAGGTGCAGCAGAAGGAGCTATTGATGCTGCAAACATATTAAAGCCGGCCCTTGCAAGAGGCGAACTGCAGTGTATTGGAGCAACAACACTGGATGAATACCGGAAACACATTGAGAAAGACCCAGCTCTAGAAAGAAGATTCCAGCCCGTCAAGGTACCTGAACCATCTGTGGACGAAACCATACAAATTCTGAAAGGGCTTAGAGAACGATATGAGATCCACCACAAGCTTCGCTACACTGATGAGTCGCTGGTAGCTGCCGCACAACTGTCATACCAGTACATTAGTGATCGGTTTCTACCCGATAAGGCTATTGACTTGATTGACGAAGCGGGATCTAGAGTTAGGCTACGTCATGCACAACTCCCTGAGGAAGCTAGAGAGCTTGAGAAAGAGCTCAGGCAGATCACAAAGGAGAAAAATGAAGCTGTTCGCAGTCAAGACTTTGAAAAGGCTGGAGAGTTGCGTGACAGGGAAATGGACCTCAAGGCACAGATCTCAGCTCTTGTAGACAAGGGCAAGGAAATGAGCAAGGCAGAGACCGAGGCCGGAGATGCGGGCCCTATTGTCACTGAGGTCGATATCCAGCACATCGTTTCCTCATGGACTGGAATCCCGGTTGAGAAAGTATCCACTGATGAATCTGACCGTCTACTCAAGATGGAGGAGACCCTTCACAAGAGAGTCATTGGTCAAGACGAAGCCGTTAAAGCCATCAGCCGAGCCATCCGGCGAGCCCGTGTCGGGCTCAAGAACCCTAACCGTCCGATTGCCAGCTTCATCTTCTCTGGTCCCACTGGTGTCGGAAAATCCGAACTAGCCAAAGCCTTGGCTGCTTACTACTTTGGCTCTGAAGAGGCTATGATCCGTCTTGATATGAGTGAGTTCATGGAAAGACACACAGTGTCCAAGCTCATCGGCTCACCCCCCGGTTACGTCGGTTACACCGAGGGTGGTCAATTGACCGAGGCGGTCCGACGCCGGCCCTACACAGTTGTACTCTTCGATGAGATAGAGAAGGCTCATCCAGATGTCTTTAACATGATGCTTCAAATTCTTGAAGATGGAAGGTTGACGGACAGCAAGGGTAGAACTGTCGATTTCAAAAACACTCTCCTTATAATGACCTCAAATGTTGGAAGTAGTGTGATTGAGAAAGGAGGCCGGAAAATTGGGTTTGACCTTGACTATGATGAGAAGGACAGCAGTTACAACAGAATCAAGAGTTTGGTAACAGAAGAATTGAAACAATACTTCAGGCCGGAGTTTTTGAACAGGCTGGATGAGATGATTGTCTTCAGACAGTTGACTAAGCTCGAAGTGAAGGAGATAGCAGATATAATGTTGAAGGAAGTGTTTGATAGATTGAAGTCCAAGGAAATAGAGCTTCAAGTGACAGAAAGGTTTAGGGACAGAGTTGTTGATGAAGGGTATAACCCGAGCTATGGAGCTAGGCCATTGAGAAGAGCTATTATGAGACTCTTGGAAGATAGCATGGCAGAGAAGATGCTTGCTAGAGAGATCAAGGAGGGTGATTCAGTAATTGTGGATGTCGACTCGGATGGTAATGTCACCGTGCTTAATGGTAGCAGTGGGACGACTAGTGTGTCTTTACCAGATCCAATTACCGTGTAA 2772 46.21 MARVLVQSTNIPGLVVGPKNGLSRGSGNTKRSVKMMSGLQVPGIRIRGFSGLRSSNALDTLVGPRKDFHSLVASTMSSRRRRASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGAEPSNIRTQVIRMVGESTEAVGAGVGGGTSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDAGPIVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKSKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGTTSVSLPDPITV 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1763700 1768006 - Conep13aG0026700.1 Cone13ag0256 450643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0256 923 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Cone13ag0256 923 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0256 923 Gene3D UVR domain 501 565 - -
Cone13ag0256 923 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Cone13ag0256 923 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Cone13ag0256 923 CDD AAA 275 427 - -
Cone13ag0256 923 Gene3D - 587 813 IPR027417 -
Cone13ag0256 923 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Cone13ag0256 923 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Cone13ag0256 923 PANTHER ATP-DEPENDENT CLP PROTEASE 93 902 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Cone13ag0256 923 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515(InterPro)
Cone13ag0256 923 FunFam ATP-dependent Clp protease subunit 588 813 - -
Cone13ag0256 923 Coils Coil 346 366 - -
Cone13ag0256 923 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524(InterPro)
Cone13ag0256 923 SMART ClpB_D2_small_2 815 905 IPR019489 -
Cone13ag0256 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 901 IPR027417 -
Cone13ag0256 923 Gene3D - 437 581 - -
Cone13ag0256 923 Gene3D - 815 913 - -
Cone13ag0256 923 SMART AAA_5 292 432 IPR003593 GO:0016887(InterPro)
Cone13ag0256 923 SMART AAA_5 635 816 IPR003593 GO:0016887(InterPro)
Cone13ag0256 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 529 IPR027417 -
Cone13ag0256 923 Pfam ATPase family associated with various cellular activities (AAA) 297 409 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone13ag0256 923 FunFam Chaperone clpB 1, putative 243 435 - -
Cone13ag0256 923 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Cone13ag0256 923 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Cone13ag0256 923 Gene3D - 246 435 IPR027417 -
Cone13ag0256 923 Coils Coil 498 525 - -
Cone13ag0256 923 Gene3D - 91 239 IPR036628 -
Cone13ag0256 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524(InterPro)
Cone13ag0256 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524(InterPro)
Cone13ag0256 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524(InterPro)
Cone13ag0256 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524(InterPro)
Cone13ag0256 923 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Cone13ag0256 923 Pfam AAA lid domain 435 536 IPR041546 -
Cone13ag0256 923 FunFam ATP-dependent Clp protease ATP-binding subunit 436 523 - -
Cone13ag0256 923 FunFam ATP-dependent chaperone ClpB 815 907 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0256 K03696 - - csv:101207083 1632.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0256 Cone-Chr13:1763700 Cone7ag0487 Cone-Chr7:2233664 1.07E-235 dispersed
Cone13ag0256 Cone-Chr13:1763700 Cone19ag0241 Cone-Chr19:1579727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63