Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0257 ATGTCGTCGGCGGAGGCATCGATCAAAGGGAATTCCGGTACCGGAATGGGGGAGAGCTTCCCCTCCGGATTCAACGAGCACCGCAGCTCTAGGAACGATAAGGAAGGCCAGAAAGGTTATTCTGCGAAAGACGCTGAAACTGCGCTTTACACGGAGCTCTGGCACGCTTGTGCTGGTCCTCTCGTAACTGTTCCTCACGAAAAGCAGCGCGTCTTCTACTTTCCCCAGGGACACATCGAGCAGGTGGAAGCGTCTACAAATCAAGTGGCAGACAAGCAGATGCCTTCATGTGACCTTCCCTATAAGATCCCTTGCCGAGTAATTAACGTACGCTTGAAGGCGGAACCAGACACTGATGAGGTCTTCGCCCAGATCACTTTGCTTCCAGAATCTAATCAAGCAGTGGAAAAGGAACCTCCTCCTCCTTCACATCCACGTTTACATGTGCACTCGTTTTGTAAGACTCTAACAGCCTCAGATACAAGTACTCATGGTGGATTTTCAGTACTGAGACGGCATGCAGACGAATGCCTTCCTCCACTGGACATGTCTCGACAACCTCCTACACAAGAACTGGTTGCCAAGGATTTGCATGGGAGCGAATGGCGATTTCGACATATCTTCCGAGGTCAACCGCGAAGGCATTTACTTCAAAGCGGATGGAGTGTTTTTGTGAGCTCCAAAAGGCTGGTTGCTGGGGATGCATTCATATTTCTAAGGGGAGAGAATGGAGAACTACGGGTAGGGGTTAGACGTGCTATGAGACAGCAGGGTAATATTCCATCTTCAGTCATATCTAGTCATAGTATGCATCTTGGTGTCCTCGCAACCGCATGGCATGCCGTTCAAACTGGAACCATGTTTACTGTATATTACAAGCCCAGGACAAGCCCTTCTGAATTCATTGTTCCATATGAACAGTACATGGAGTCAGTTAAGAAGAATTATTCTATTGGAATGAGGTTTAAAATGAAATTTGAAGGTGAAGAAGCCCCGGAACAGAGGTTCACCGGTACTATTGTTGGGATGGAGGATGCAGATCCTGACAGGTGGAAAAATTCCAAATGGAGATGCCTTAAGGTGAGATGGGATGAGACTTCCACAATTCCTCGCCCTGAAAGAGTCTCGCCTTGGAAAATAGAGGCTGCTCTAGCTCCTCCTGCAATAAATCCCCTTCCAGTGGCTAGGTCAAAAAGGCCTCGTTCAAATGTGGTTCCCTCCTCCCCCGACCCCTCTGTCCTTCCTCGAGAAGGTTCATCAAGATTGACTGCAGACACTCATCCTGGTAGTGGGTTTTCAAAGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTACCCAGAAAGCAATGCATCTGACGCTGTTGAAAAATCAGTTGTATGGCCAGCTTCACTAGATGATAAGGTGGGCGTGGTTTCCTCTTCTAGAAGACATGGGGCTGAAAACTGGATGCCTCCTGGAAGAAATGAGCCGACCTACACCGATCTTCTATCGGGCTTCAATTCAAATACTTATTCCACCCATGGTAGCCATCAAGCCTTTATCGATCCAGTAGTTGCTGCTAATTCAATTAGAACACATTCAACGGATCAGGATGGAAAGTTTAATTTGCATGGTAGCCCATGGTCCTTTATATCTCCTAGTCGGTCACTTAACCTGGTGGACTCTAATCAGAAAGGCCATCTGCAAGTTGGTGAGGGGTCTTTTGAAACTCGAGTAAAGTCTAGATATGATGGGTTTAGTGACTATTCTATGCTCCATGATAGAAACGAACCCCTCACCCCACAAGGAAACTGGTTAATGCCTCCACCTTCCCCATTTCATTTCGAAAATCCAGTTCATTCAAGGGAGTTGGTACCAAAACCCATATTAGTACAGAACCAAGAGGCTGCCAAACCAAAAGATGGGGATTGCAAGCTTTTTGGTATCTTCATTAGGAACCCTGTTACATTAGATCCTGCACCTGCTTCTGAATCTGATCAGAAGTCTGAACATTCAAGAGGTTCAAAATCGACAGATAACCCTTTAGCTATGATCGAGCCTGACAAACGTCAACAGAACTCTAAGCACCATATAAGAGATGTTCAGGGCAAATCACAGGGTGGTTCAACCAGGAGTTGTACAAAGGTCCACAAGCAGGGAATTGCGTTAGGTAGATCAGTGGATCTTAGTAAGTTCAGCAACTACGATGAACTGATTGCTGAGCTGGATGAACTGTTTGAATTTGGTGGGGAGTTAATGGTTCCACGAAAGAATTGGCTTATTATATATACTGATGATGAGGGTGATACTATGCTTGTTGGAGATGATCCGTGGCAGGAGTTTTGTGCTATGGTTCGTAAGATATTCATATATACAAGAGAAGAGGTGCAGAAGATGAATCCAGGGTCTCTAAATGCAAAAACGGAAGAAAATGCTCCGGCCGGTGAAGGTGCCGAGGCAAAAGAGGTCAAAGGTCTGCACATACCTTTAACACCAACCTCTGAGAAATCATGA 2502 46.2 MSSAEASIKGNSGTGMGESFPSGFNEHRSSRNDKEGQKGYSAKDAETALYTELWHACAGPLVTVPHEKQRVFYFPQGHIEQVEASTNQVADKQMPSCDLPYKIPCRVINVRLKAEPDTDEVFAQITLLPESNQAVEKEPPPPSHPRLHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNIPSSVISSHSMHLGVLATAWHAVQTGTMFTVYYKPRTSPSEFIVPYEQYMESVKKNYSIGMRFKMKFEGEEAPEQRFTGTIVGMEDADPDRWKNSKWRCLKVRWDETSTIPRPERVSPWKIEAALAPPAINPLPVARSKRPRSNVVPSSPDPSVLPREGSSRLTADTHPGSGFSKVLQGQEFSTLRGNYPESNASDAVEKSVVWPASLDDKVGVVSSSRRHGAENWMPPGRNEPTYTDLLSGFNSNTYSTHGSHQAFIDPVVAANSIRTHSTDQDGKFNLHGSPWSFISPSRSLNLVDSNQKGHLQVGEGSFETRVKSRYDGFSDYSMLHDRNEPLTPQGNWLMPPPSPFHFENPVHSRELVPKPILVQNQEAAKPKDGDCKLFGIFIRNPVTLDPAPASESDQKSEHSRGSKSTDNPLAMIEPDKRQQNSKHHIRDVQGKSQGGSTRSCTKVHKQGIALGRSVDLSKFSNYDELIAELDELFEFGGELMVPRKNWLIIYTDDEGDTMLVGDDPWQEFCAMVRKIFIYTREEVQKMNPGSLNAKTEENAPAGEGAEAKEVKGLHIPLTPTSEKS 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1771296 1776877 - Conep13aG0026800.1 Cone13ag0257 450644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0257 833 CDD B3_DNA 150 252 IPR003340 GO:0003677(InterPro)
Cone13ag0257 833 MobiDBLite consensus disorder prediction 1 26 - -
Cone13ag0257 833 MobiDBLite consensus disorder prediction 391 433 - -
Cone13ag0257 833 Gene3D - 315 385 - -
Cone13ag0257 833 MobiDBLite consensus disorder prediction 654 709 - -
Cone13ag0257 833 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677(InterPro)
Cone13ag0257 833 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677(InterPro)
Cone13ag0257 833 FunFam Auxin response factor 150 254 - -
Cone13ag0257 833 SUPERFAMILY CAD & PB1 domains 706 784 - -
Cone13ag0257 833 FunFam Auxin response factor 702 796 - -
Cone13ag0257 833 MobiDBLite consensus disorder prediction 797 833 - -
Cone13ag0257 833 SUPERFAMILY DNA-binding pseudobarrel domain 149 281 IPR015300 -
Cone13ag0257 833 SMART B3_2 152 254 IPR003340 GO:0003677(InterPro)
Cone13ag0257 833 Gene3D - 703 796 - -
Cone13ag0257 833 Gene3D - 149 254 IPR015300 -
Cone13ag0257 833 ProSiteProfiles PB1 domain profile. 707 791 IPR053793 -
Cone13ag0257 833 FunFam Auxin response factor 315 387 - -
Cone13ag0257 833 Pfam AUX/IAA family 753 795 IPR033389 -
Cone13ag0257 833 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 797 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone13ag0257 833 MobiDBLite consensus disorder prediction 1 40 - -
Cone13ag0257 833 Pfam Auxin response factor 278 360 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0257 Cone-Chr13:1771296 Cone19ag0688 Cone-Chr19:5790271 1.58E-203 dispersed
Cone13ag0257 Cone-Chr13:1771296 Cone19ag0242 Cone-Chr19:1587389 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44582 PF13177 DNA_pol3_delta2 7.40E-26 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0257 K14486 - vvi:100268072 1198.73