Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0266 ATGGGGAACTGCTGCTCCGACGAGGCCGGCGGTCGCTCGGCCGTCGGAGGTACTGCTTCCTCTCTCTACAATCCCTCCGACGAACCAAACGATGCCGTCAATAGCTTCTTGAGATCTCGGGGCTACAACGGCGTCATCTCTCAGATCGAGTTATCATACTCTGCTTCAAACCTGCGTGATCGGGATGTCTTCTCCAAGAGTGATCCAATGGTGGTTATATACAGAAGAGGAAGAGATGGAACAATTGAAGAGTTTGGCCGCACAGAAGTCGTCCTAAATTCACTAAATCCCAAATGGATCAGAAAACATACCATCGCCTTTCATTTTGAGGTTGTACAGACGTTGGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATCTAGATGTTAAGATGCTCAAGCTTGATGAGCAGCAGTATCTCGGTGAGGCAACTTGTGCACTGTCAGAGATAGTCACTAAAGCAGATAGGTCACTGACCTTAGATCTTATACATAGAGAAGACTCTGTCAGAGCTACTCATTCCCATCACCGTGGAAATCTCACTGTGCATGCTGAGGAATGTTTTAATTCAAAAACCACAGCAGAAGTGATATTAAGGTGTTCCAACTTGGATAACAAGGATCTCTTCTCAAAAAGCGACCCCTTTTTGGTAATTTCAAAATTTGTTGAGAGCGGGATCCCAATTCCAGTTTGCAAGACGGAAGTCGTAAAAAATGATCTGAAACCAACATGGAGTTCAATGTTCTTGAATATTCAACAAGTTGGAAGCAAGGACAGTCCATTAATAATAGAGTGCTTAAATTTCAACAGCAGTGGAAAGCACGATTTGATCGGAAAAGTTCAGAAATCCCTAGCAGATTTGGAAAAGCTACATTTAAGCAGACAAGGAGAAAATCTATCCATACCAACTACTGTTGGGCGTGATTTCCACAACAAAATAATAAAAGGTCAGCTATTCGTGGAAAAATATTCTGAGAACATGCAACATACATTTCTGGATTACTTGGCTGGGGGATGTGAGTTGAACTTCATGGTAGCTGTTGATTTCACAGCTTCAAATGGGAACTCTCGCCTCCCAGATTCCTTGCATTATGTTGATCCTTCAGGGCGTCCAAATGCATACCAAAGAGCAATTCTGGAGGTTGGAGAAGTGTTGCAATTCTATGATTCAGACAAACGCTTTCCTGCCTGGGGATTTGGAGCCCGACCAATAGATGGTCCAGTCTCTCATTGTTTCAACTTGAATGGAAGTAGTCACTACTGTGAGGTTGAAGGAATCCAAGGAATTATGATGGCATATAATAGTGCGCTCCTTAATGTATCTCTTGCAGGGCCAACTCTTTTTGGTCCTGTGATTAGCAATGCTGCACTAATTGCCAGCCAATCTCTAGCAAATGGTGGACAAAAATATTTTGTTTTGTTAATTATTACGGATGGAGTAGTAACGGATCTCCAGGAAACTAGAGATGCACTGGTGAAAGCATCAGACCTGCCATTGTCAATTCTCATTGTTGGAGTTGGTGGAGCTGACTTTAAAGAAATGGAGGTCTTAGACGCAGACAAAGGAGATAGGCTTGAAAGCTCAACTGGACGTGTTGCCTCACGTGACATAGTTCAGTTTGTTCCATTCCGAGATGTACAAAGTGGGGAGATTTCTGTTGTTCAAGCACTTCTAGCAGAATTACCCACCCAATTTCTGACCTATATGCGCAGTCGAGATATTCAGCCCAATCCATGA 1743 43.14 MGNCCSDEAGGRSAVGGTASSLYNPSDEPNDAVNSFLRSRGYNGVISQIELSYSASNLRDRDVFSKSDPMVVIYRRGRDGTIEEFGRTEVVLNSLNPKWIRKHTIAFHFEVVQTLVFRVYDVDTQFHNLDVKMLKLDEQQYLGEATCALSEIVTKADRSLTLDLIHREDSVRATHSHHRGNLTVHAEECFNSKTTAEVILRCSNLDNKDLFSKSDPFLVISKFVESGIPIPVCKTEVVKNDLKPTWSSMFLNIQQVGSKDSPLIIECLNFNSSGKHDLIGKVQKSLADLEKLHLSRQGENLSIPTTVGRDFHNKIIKGQLFVEKYSENMQHTFLDYLAGGCELNFMVAVDFTASNGNSRLPDSLHYVDPSGRPNAYQRAILEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYNSALLNVSLAGPTLFGPVISNAALIASQSLANGGQKYFVLLIITDGVVTDLQETRDALVKASDLPLSILIVGVGGADFKEMEVLDADKGDRLESSTGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYMRSRDIQPNP 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1864543 1870318 + Conep13aG0027700.1 Cone13ag0266 450653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0266 580 CDD C2B_Copine 196 291 IPR037768 -
Cone13ag0266 580 SMART VWA_4 342 539 IPR002035 -
Cone13ag0266 580 MobiDBLite consensus disorder prediction 1 26 - -
Cone13ag0266 580 FunFam Protein BONZAI 1 51 195 - -
Cone13ag0266 580 SUPERFAMILY vWA-like 341 525 IPR036465 -
Cone13ag0266 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 166 IPR035892 -
Cone13ag0266 580 CDD C2A_Copine 47 168 - -
Cone13ag0266 580 Pfam C2 domain 53 157 IPR000008 -
Cone13ag0266 580 Pfam C2 domain 199 292 IPR000008 -
Cone13ag0266 580 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Cone13ag0266 580 PANTHER COPINE 28 579 IPR045052 GO:0005544(InterPro)|GO:0005544(PANTHER)|GO:0005886(PANTHER)|GO:0071277(PANTHER)
Cone13ag0266 580 Gene3D C2 domain 196 329 IPR035892 -
Cone13ag0266 580 Pfam Copine 363 578 IPR010734 -
Cone13ag0266 580 SMART C2_3c 199 298 IPR000008 -
Cone13ag0266 580 SMART C2_3c 48 161 IPR000008 -
Cone13ag0266 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 290 IPR035892 -
Cone13ag0266 580 CDD vWA_copine_like 313 567 IPR010734 -
Cone13ag0266 580 ProSiteProfiles C2 domain profile. 178 303 IPR000008 -
Cone13ag0266 580 Gene3D C2 domain 52 195 IPR035892 -
Cone13ag0266 580 ProSiteProfiles VWFA domain profile. 344 563 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0266 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0266 Cone-Chr13:1864543 Cone5ag0009 Cone-Chr5:68856 5.67E-265 dispersed
Cone13ag0266 Cone-Chr13:1864543 Cone19ag0250 Cone-Chr19:1644555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83