Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0268 ATGGCTCATGTTAGCCAACACCAGCTTCCCATCGATGGCGACGGCATTTGCATGCTCTGTAAGGCGACGCCATTGGAGGGGGAGAGGCTCACTTGCAAAACCTGTGTTACGCCGTGGCACGTAGGCTGTCTGTATGTTTTACCAGAAACCCTAGATTCTACCGCCTATTGGGAGTGTCCTGACTGTATTACTCTTCCCGGCGATCTTCCAGAAGTTTCGGGCGGGCAGTCATTTACCCCTGGTGAGAGCTCCAGTGGCTTGGTCGCTGAGATCCGAGCAATCGAGGCTGACCATTCGTTGACTGAGAGAGAGAAGGCGAAGAGGCGTCAGGAACTGTTGGGCGGGAAAGCTGGGAAGGAGGAGGATGAAGATGAGGTCGGGAAGAAGAGGAAGAGACAGAATGTGTCCTCTGTTCTTGGTCATTTCGAATGTGCTGTCTGTTGTGCCGTTCCGGAGAGGCCTGTCTCGACTCCGTGTGGCCACAATTTCTGCCTACGATGCTTCCAGAAGTGGACTGGACAAGAACGGAAAAGGACCTGTATTACGTGCCGCCATCCAATTCCAATCAAAATGGCAACCCAACCCCGCATCAACTCTACGCTTGTTGCTGCCATTCGAATGGCGAAGATGGATCATGCATATGGTCCCACTCTACCTCAAAGGGTTTATCATTTTGTACACAACCAGGATAGGCCAGATAAGGCCTTTATGACAGAGCGATCACAAAGGAAGGGTAAATCCAATGCAGCAAGCGGAAAGATATTTGTTACAATACCATCTGATCATTTTGGACCCATTCCAGCTGAAAATGATCCTGAGAGGAATCAGGGTGTGTTGGTTGGTGAGACTTGGGAGGACAGGATGGAATGTCGCCAATGGGGTGCTCACTTTCCGCATGTTGCTGGTATTGCTGGGCAGTCAAATTATGGTGCACAGTCTGTGGTTCTTTCTGGGGGGTACCAAGATGATGAGGATCATGGAGAGTGGTTTCTCTACACTGGAAGTGGTGGCAGAGACTTAAGTGGAAACAAAAGAACAAGCAAAGACCAGTCATTTGACCAGGCATTTGAGAAAATGAACAAAGCACTGCTAGCTAGTTGTCTGAAAGGATATCCTGTCAGGGTAGTTAGGTCCCACAAGGAGAAGCGCTCTTCATATGCCCCAGAGAAGGGGCTACGGTATGACGGAGTTTATAGAATTGAAAAATGTTGGCGAAAAGTGGGTATCCAGGGCTATAAGGTGTGTCGTTACTTGTTTGTTAGATGTGACAATGCCCCTGCTCCATGGACGAGTGACGAACATGGAGATCGTCCTAGAACTCCTCCAAAAATTCCCGAGTTGCTTAGTGCTACAGACATAACAAAGAGGAAGGGAGAGCCATCATGGGGCTTTGATGCTGATGAGAATAGTTGGAAGTGGTTGAAACCCCCACCAGTTAGCCAGAGACCTGTTGGCATCCCTGATTCTGATTCCTTGAAGAGCTCTAGGAGAGCAATTCGGAGGACAAAGCAATTGACTATTCGACAAAAATTGCTCAAAGAATTCAGCTGCGTTATTTGCAAGGAGGTAATGAATCATCCAGTGACAACACCTTGTGCCCATAACTTCTGCAAGGTATGCTTGGAAGGTGCTTTTGCCGGGAAGACATTCATAAGAGACAGAAACAAAGGTGGAAGGTCACTCAGATCCCAAAAGAATGTCATGACTTGTCCTTCATGCCCAAACGATATCTCTGATTTTCTTAAAAACCCTCAGGTAAATAGGGAGTTGTTGGATATGATTGAGACGCTGAAAAATAAGCCTGAAGAGGATGAAGGAGCTGATGCTGATGGTGAGGGCGAAGATTCTGGAGATGAAGAAAACTTAGAAAGACATGAAGAAGAAGCTGAGCCTGAGAATAAGAAGGAAAAGGAGGATGATAACAAGGAAGGAATGGTTGTAGATAGGAAAATGAAGGGAATTCTTATTGATGAAGGGTGTGAGGATATGCAAGAGAAAATGGAAGAGAAAGCTGCTGCCGCCATGGTGCAAGAGGATAGAGATGCTTCTCCTTCGAGTCCTCTCCAGGTTCGGTCTGAGGAGGATGACTTTGAATGA 2097 47.5 MAHVSQHQLPIDGDGICMLCKATPLEGERLTCKTCVTPWHVGCLYVLPETLDSTAYWECPDCITLPGDLPEVSGGQSFTPGESSSGLVAEIRAIEADHSLTEREKAKRRQELLGGKAGKEEDEDEVGKKRKRQNVSSVLGHFECAVCCAVPERPVSTPCGHNFCLRCFQKWTGQERKRTCITCRHPIPIKMATQPRINSTLVAAIRMAKMDHAYGPTLPQRVYHFVHNQDRPDKAFMTERSQRKGKSNAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGETWEDRMECRQWGAHFPHVAGIAGQSNYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQAFEKMNKALLASCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGYKVCRYLFVRCDNAPAPWTSDEHGDRPRTPPKIPELLSATDITKRKGEPSWGFDADENSWKWLKPPPVSQRPVGIPDSDSLKSSRRAIRRTKQLTIRQKLLKEFSCVICKEVMNHPVTTPCAHNFCKVCLEGAFAGKTFIRDRNKGGRSLRSQKNVMTCPSCPNDISDFLKNPQVNRELLDMIETLKNKPEEDEGADADGEGEDSGDEENLERHEEEAEPENKKEKEDDNKEGMVVDRKMKGILIDEGCEDMQEKMEEKAAAAMVQEDRDASPSSPLQVRSEEDDFE 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1878840 1883317 - Conep13aG0027900.1 Cone13ag0268 450655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0268 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 64 IPR013083 -
Cone13ag0268 698 ProSiteProfiles Zinc finger RING-type profile. 517 573 IPR001841 -
Cone13ag0268 698 SUPERFAMILY FYVE/PHD zinc finger 7 67 IPR011011 -
Cone13ag0268 698 MobiDBLite consensus disorder prediction 627 676 - -
Cone13ag0268 698 ProSitePatterns Zinc finger PHD-type signature. 17 62 IPR019786 -
Cone13ag0268 698 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Cone13ag0268 698 Gene3D - 244 440 IPR036987 -
Cone13ag0268 698 ProSiteProfiles Zinc finger RING-type profile. 144 184 IPR001841 -
Cone13ag0268 698 SUPERFAMILY RING/U-box 143 196 - -
Cone13ag0268 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 623 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone13ag0268 698 MobiDBLite consensus disorder prediction 597 698 - -
Cone13ag0268 698 Pfam RING-type zinc-finger 517 548 IPR027370 -
Cone13ag0268 698 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Cone13ag0268 698 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Cone13ag0268 698 SMART G9a_1 268 425 IPR003105 -
Cone13ag0268 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 638 IPR013083 -
Cone13ag0268 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 211 IPR013083 -
Cone13ag0268 698 Pfam Zinc finger, C3HC4 type (RING finger) 144 183 IPR018957 GO:0046872(InterPro)
Cone13ag0268 698 Pfam SAD/SRA domain 275 424 IPR003105 -
Cone13ag0268 698 MobiDBLite consensus disorder prediction 606 626 - -
Cone13ag0268 698 SMART ring_2 517 573 IPR001841 -
Cone13ag0268 698 SMART ring_2 144 183 IPR001841 -
Cone13ag0268 698 SUPERFAMILY RING/U-box 511 599 - -
Cone13ag0268 698 MobiDBLite consensus disorder prediction 99 132 - -
Cone13ag0268 698 SUPERFAMILY PUA domain-like 248 444 IPR015947 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0268 Cone-Chr13:1878840 Cone7ag0355 Cone-Chr7:1542641 4.16E-18 dispersed
Cone13ag0268 Cone-Chr13:1878840 Cone19ag0252 Cone-Chr19:1667868 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0268 K10638 - csv:101219001 874.389