Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0281 ATGGCCTTCACAACCGCGAAATTATCGGAATTGCCGCTAAGGAACTCACTTCCACTGGCCTCTCACTCTCGATCAATCTTCTCAGCTCCAAAGCTTTCGCCGCAGATTTTCAAGCCGCTATATTCCCTCAGAACTACGACCGAACACAGCGGTAGGAAAAACCCTAACTCCTCGCATAAGTCCAGGAATCCGTCTTCTCCTTGGCTCTCCAAATGGCCGGCGCGGAATCGTCAGACTGACTTACCTGACCGCAAAGTTAAACAGAATGTAACTGAGTTGTCGGAGGAGACTACTCGGTCTCAGTACTTCGATAAGAACAGAGGCGAGAGTGCGATTGAGAGAATTGTTCTCCGATTACGAAATTTGGGGTTATCGGACGGTGTGGATGGGAAGGGAGAGGAAGATGGAGACGGATTGGACGGTCAGGATGTGACAGTGACTGGTGAGGAAAAGCTTGGTGATTTGTTGCAGCGTGAGTGGATTCGACCTGACTACATTTTGGACACAGAAAAGGATGGGGAAGAAGATATGGCTCTGCCATGGGACAAAGGGGAGGACAAGGTTGAAGAGGAATTTGGAGGTACAGAGTTGAGGAGGAAGGTAGTGAAGGCACCGACGTTGGCAGAGTTAACGATTGAAGACGAGGAGCTTAGGCGGCTGAGGAGAATGGGGATGTATCTTAGAGATAGAGTTAATGTACCCAAAGCTGGGTTGACACAGGCTGTTTTAGAGAAGATTCATGGAAAGTGGAGGAAGGAGGAGTTGGTAAGGCTCAAGTTTCACGAGGAGCTGGCCCACGATATGAAGACTGCACATGAAATAGTGGAGCGTCGAACAGGGGGATTAGTTATATGGAGAGCGGGAAGTGTCATGGTGGTTTTTCGTGGAACTAACTATGAGGGTCCTTCTCAGTCCGAACCGAATGTTAGGGAGGTAGATGGTTTATTTGTTCCAGATGTTTCTCCTCCTGAAAGAACTGACGTTAGTGCAACTTCAACACTTGAGGAGAGTAAGTTGATGGTTAGGGCGCCAGAGCATCAGAAGGCTCTGACAGCTGAAGAGGCTGAATTTAGTTCCCTGCTGGATGGATTAGGTCCTCGCTTTGTTGAATGGTGGGGTACAGGAGTACTTCCTGTTGATGCTGATTTGCTTCCCCCAAAGATTCCTGATTATAAGACACCCTTCAGGAGCCTTCCTACTGGGATGCGACCCCGACTGACCAATGCAGAGATGACTAATTTACGGAAAGTAGCGAAGTCACTACCTTGTCATTTTGCCCTCGGGAGAAATAGGAATCATCAGGGCTTGGCAGCTGCTATAGTTAAGCTTTGGGAGAAAAGTCTAGTTGTGAAGATTGCTGTAAAACGAGGTATCCAAAATACAAACAACAAACTAATGGCTGATGAGATAAAGAATTTAACAGGAGGTGTCTTGCTCCTGAGAAACAAATACTTCATTGTCATGTATCGCGGAAAGGATTTTCTCCCAACAAGTGTAGCAGCTGCTTTGGCAGAAAGGGAAGAATTGACAAAACAAATTCAAGCTGTTGAGGAAAAAGTACGTATCAAAGTAAAAGTGGCAGAGACTGCTCCATCTGGTGAAGATGGAGAGCCACTTGCAGGTACTTTAGCTGAGTTCTATGAAGCTCAAGCCCGTTGGGGAAAAGAGATATCTGCTGAAGACCGGGAGAGAATGATTGAAGAAGACTCGAAAGCTAAAAATGCAAGGATTATCAAACGGATTGAACATAAAATGGGAGTTGCCCAAGCCAAGAAACTTAGAGCAGAGAGATTACTGTCTAAAATAGAAGCATCCATGGTCCCTGCTGGCCCTGATGATGACCAGGAAACAATCACCGATGAGGAAAGAACTATGTTTCGCAGGGTTGGCTTAAAAATGAAAGCGTATCTGCCTGTAGGTATTCGTGGTGTTTTTGATGGTGTCATTGAAAATATGCATCTGCATTGGAAGCATAGGGAACTTGTAAAGTTGATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGACACGGCAAGGTTATTAGAGTATGAGAGTGGTGGGATACTAGTTTCAATAGATAGAGTTCCAAAAGGATATGCCATTACTTACTATCGTGGAAAGAATTATCGTCGCCCCATTAGCTTGAGGCCAAGAAACCTACTTACTAAAGCGAAGGCATTAAAGCGATCAGTGGCCATGCAACGCCATGAGGCTCTCAGTCAACACATATCTGAACTGGAGGCAACCATTGAGCAGATGAAAAAAGAAATTGGTGTTGATAAAGATCAAGAGGTTAAGAAAAAACCAAGCTCACAAGATGATAGCCATGTCTCAAATTCTATTGAAAGCGAGGAAGAAGCTTCTCTATTTGAGGATTCTAATGATGACAATGATGATGCTGTGGAATGGGAAGAGGACGACCTCTCTGATTTTCCAAGTGATGAAGAAAGCGATGGGCCATAA 2463 45.27 MAFTTAKLSELPLRNSLPLASHSRSIFSAPKLSPQIFKPLYSLRTTTEHSGRKNPNSSHKSRNPSSPWLSKWPARNRQTDLPDRKVKQNVTELSEETTRSQYFDKNRGESAIERIVLRLRNLGLSDGVDGKGEEDGDGLDGQDVTVTGEEKLGDLLQREWIRPDYILDTEKDGEEDMALPWDKGEDKVEEEFGGTELRRKVVKAPTLAELTIEDEELRRLRRMGMYLRDRVNVPKAGLTQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVIWRAGSVMVVFRGTNYEGPSQSEPNVREVDGLFVPDVSPPERTDVSATSTLEESKLMVRAPEHQKALTAEEAEFSSLLDGLGPRFVEWWGTGVLPVDADLLPPKIPDYKTPFRSLPTGMRPRLTNAEMTNLRKVAKSLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMADEIKNLTGGVLLLRNKYFIVMYRGKDFLPTSVAAALAEREELTKQIQAVEEKVRIKVKVAETAPSGEDGEPLAGTLAEFYEAQARWGKEISAEDRERMIEEDSKAKNARIIKRIEHKMGVAQAKKLRAERLLSKIEASMVPAGPDDDQETITDEERTMFRRVGLKMKAYLPVGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVSIDRVPKGYAITYYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISELEATIEQMKKEIGVDKDQEVKKKPSSQDDSHVSNSIESEEEASLFEDSNDDNDDAVEWEEDDLSDFPSDEESDGP 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2074872 2080272 + Conep13aG0029900.1 Cone13ag0281 450668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0281 820 FunFam CRM-domain containing factor CFM3B, chloroplastic 617 719 - -
Cone13ag0281 820 MobiDBLite consensus disorder prediction 785 820 - -
Cone13ag0281 820 MobiDBLite consensus disorder prediction 77 97 - -
Cone13ag0281 820 FunFam CRS2-associated factor 1, chloroplastic 211 306 - -
Cone13ag0281 820 Pfam CRS1 / YhbY (CRM) domain 213 295 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 Pfam CRS1 / YhbY (CRM) domain 406 490 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 Pfam CRS1 / YhbY (CRM) domain 618 705 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 SUPERFAMILY YhbY-like 617 715 IPR035920 -
Cone13ag0281 820 Gene3D - 618 753 IPR035920 -
Cone13ag0281 820 SUPERFAMILY YhbY-like 406 497 IPR035920 -
Cone13ag0281 820 ProSiteProfiles CRM domain profile. 210 306 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 MobiDBLite consensus disorder prediction 46 97 - -
Cone13ag0281 820 ProSiteProfiles CRM domain profile. 616 716 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 ProSiteProfiles CRM domain profile. 404 501 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 MobiDBLite consensus disorder prediction 757 820 - -
Cone13ag0281 820 SUPERFAMILY YhbY-like 211 303 IPR035920 -
Cone13ag0281 820 Gene3D - 405 498 IPR035920 -
Cone13ag0281 820 Gene3D - 210 307 IPR035920 -
Cone13ag0281 820 MobiDBLite consensus disorder prediction 46 73 - -
Cone13ag0281 820 Coils Coil 499 519 - -
Cone13ag0281 820 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 44 792 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Cone13ag0281 820 Coils Coil 736 763 - -
Cone13ag0281 820 SMART CRS1_YhbY_2 212 295 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 SMART CRS1_YhbY_2 406 490 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 SMART CRS1_YhbY_2 618 705 IPR001890 GO:0003723(InterPro)
Cone13ag0281 820 MobiDBLite consensus disorder prediction 757 781 - -
Cone13ag0281 820 FunFam CRS2-associated factor 1, chloroplastic 405 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0281 K27708 - - csv:101219948 1086.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0281 Cone-Chr13:2074872 Cone7ag0744 Cone-Chr7:4540877 3.53E-151 dispersed
Cone13ag0281 Cone-Chr13:2074872 Cone11ag0135 Cone-Chr11:604167 1.43E-139 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32