Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0287 ATGATGGTCATTCAAAAGAAAATAGCAGCAAATGCAGTAGCGGGGAAAACAGCTAGGGCTTGTGATAGCTGTTTGCACAGAAGGGCTCGTTGGTTTTGTGCTGCTGATGATGCTTTTCTTTGCCACTCATGTGATGTTTCTGTTCATTCGGCTAATCAATTGGCGAGTAGACATGAAAGAGTCCATCTTGAGACGGCGTCGTTCAAGCCTAGCGCGTATCAATCTAAGCTCAGTCCTCAACCTTCATGGCATCAAGGGTACACTCGAAAAGCTCGAACCCCACGACATAACAGGTTCGCTCAACAGGCTAAAGCGAATAATATTAATAATAAAGACAAGGGTTTGATTAATAATCCCGTGATGCCACTTGTTCCGGAAATCGGATGTGAAGAAGGTAATTTTGTTGATGATGAGACTGAAGAACAGCTTCTTCATCGAGTTCCGGTTTTCAATCCATTTGATCCCGAATTTTGTACTGTATCGAGCGATGAAGGCCGTGTTGACCTTGGAAGTGCTCATTATTTAGAGGATAATTTAGAAAACCTAGGGTTTCTACCGTCAGAAGGTGATCTTGCTGAGTTTGTTGCTGATGTTGGGAGCTTACTAGTAAGAGAAGAAGATCAGGGGGGAGTGTTTCATGAACTTAAACATGAAGATGATCATGTCGATCATACAATGAAGGTTAAGGATGAAGAAGTGGAAGTTGAAGATACATGTGACTATTTGGATCCCAATTTGGATTTGGTAAGAGAAACCCTAGATTGGAATTGCTTTGAGAGTGATCATGATCGTGTAATGGAGCAGAAAGGGGAAGACATGACAGAGAATTTAGGAAATATTAGTAGTGATGGATATTGTAAAGTAGAAAGAAAGAGGAAGATCATATCATTGAGGTTAAACTACGATGCAGTTATTACAGCTTGGGATGGTCAAGCTTCTCCATGGACAACAGGAAAGAAGCCTGATTTCAACCCCGACGATTGTTGTCCAGATTGCTTGGGAGCATGGACTAGAGATGTTCATAACCCGAATGAAGGAACAGGAGTCTTAGGCAGGATTAATAATTGTGACGGGAATATCGGTGGAAGAGAAGCAAGAGTGTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTTTCCAAGAAAATAAGATATGAAGTTAGGAAGCTGAACGCAGAGAAGAGGCCAAGAATGAAAGGTTTAGAGATGACTATCAACGTGTACATGCTGGTGAATAATGGGAGCACAGTGAAGGAACAAATTAAGACATGTAGTTTCTCCCTTGCAAAGCAGTAA 1296 41.51 MMVIQKKIAANAVAGKTARACDSCLHRRARWFCAADDAFLCHSCDVSVHSANQLASRHERVHLETASFKPSAYQSKLSPQPSWHQGYTRKARTPRHNRFAQQAKANNINNKDKGLINNPVMPLVPEIGCEEGNFVDDETEEQLLHRVPVFNPFDPEFCTVSSDEGRVDLGSAHYLEDNLENLGFLPSEGDLAEFVADVGSLLVREEDQGGVFHELKHEDDHVDHTMKVKDEEVEVEDTCDYLDPNLDLVRETLDWNCFESDHDRVMEQKGEDMTENLGNISSDGYCKVERKRKIISLRLNYDAVITAWDGQASPWTTGKKPDFNPDDCCPDCLGAWTRDVHNPNEGTGVLGRINNCDGNIGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGLEMTINVYMLVNNGSTVKEQIKTCSFSLAKQ 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2145816 2147887 - Conep13aG0030500.1 Cone13ag0287 450674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0287 431 Pfam B-box zinc finger 18 61 IPR000315 GO:0008270(InterPro)
Cone13ag0287 431 CDD Bbox1_BBX-like 20 63 IPR049808 -
Cone13ag0287 431 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 400 IPR052453 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone13ag0287 431 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270(InterPro)
Cone13ag0287 431 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515(InterPro)
Cone13ag0287 431 SMART bboxneu5 16 63 IPR000315 GO:0008270(InterPro)
Cone13ag0287 431 Pfam CCT motif 363 400 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0287 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0287 Cone-Chr13:2145816 Cone9ag0457 Cone-Chr9:2147817 3.17E-74 dispersed
Cone13ag0287 Cone-Chr13:2145816 Cone19ag0279 Cone-Chr19:1994695 1.98E-236 wgd
Cone13ag0287 Cone-Chr13:2145816 Cone6ag0443 Cone-Chr6:2161648 3.55E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011667 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44586 PF00571 CBS 7.00E-14 No_clan Cone TF