Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0296 ATGAAGAAGCTAAGTCCTTTGAACTCTGAAGTTGCCGAGTCTCCTCCTTCCTCTTCACATCTCGCAGTTTCAACCAAGCTCAACTCAACTGCTCAAAACTCCAAGTGGACTGGAATAATTCTGGCTGAAAATGTCCATGTGAATTCTGAACACAATATGGTCTTAGAAACAATTCAAATGAGTCGCTTAGCCAATGGAGAAGCTGAGATAAGTCTTCACAAACAAAGTGACCAAGCTTCATGTCAAGGGCTTAATGGAAGATGTGGAAATTCGGGTTCTGATAGAACCAGTGGCAGACCTTGTTTAGATGAAGATTGTGAAGAAGAAAATGCATTGGGAGTGTCAACCAGGGATGATTTTGGCAATCAAAATACAAACATGGAGCCTGATATGTCACGTAAAAAAGCAAGGAAGCAAAAAGAAATAACTTTTCAGGATATGTATAACGACCAGGACATCTTTGATCAAGACGACGATGATGACAGTGACTGGGAGCCCTTGCAGAATCGTGGTGAAATAAAGAAGTGGTCCTGCACCAATTGTACGATGGTCAATCTAGATGATGTTATGCATTGTGATGTATGTGGGGAGCACAGAGAGTCTGGAATCCTGAAACATGGCCATTTTGCTTCCCCGCTGTTGGAAGATACAGGTGTGACTGAAGGAGAGTCAGAAATTAAAGGAAAGAAAAATGGCTTCAACTCACAAGTCTCAGCCTCTAATAGTTCCACGGCAATAGGTTTTGATGAGAGGATGTTACTACACTCAGAAGTTGCGATGAAGTCACATCTGCACCCAGAAAGACCGGACCGTCTCAGAGCTATTGCTGCTAGCCTAGCTGCAGCTGGTATATTTCCTGGAAGATGCTACCCAATTTCAGCTAGAGAAATTACACTAGAGGAGCTTCAGATGGTTCATTCCTCGGAGCATGTTGAAAATGTTGAACTTACAAGCCATATGCTTTCAAGCTATTTTACTCCTGATACATATGCCAACGAACATTCAGCACGGGCTGCTAGGCTTGCGGCTGGTTTATCTGCTGATCTTGCTTCTGAAATAGTTTCTGGACGTGCCAAAAATGGTTTTGCACTGGTTAGGCCTCCTGGTCATCATGCGGGTGTTAGACAGGCCATGGGGTTTTGCCTCCATAACAATGCAGCTGTTGCAGCATTCGCAGCTCTAGCTGCAGGTGCGAAGAAGGATGTTCATCATGGGAATGGCACACAGGAAATATTCGAGCAGAATAAATCAGTCTTGTACATATCCCTGCATAGGCATGAGGGAGGAAGGTTCTATCCTGGAACTGGAGCTGCTGATGAGGTTGGCTCAATGGGTGCAGAAGGATACTGTGTGAATGTTCCTTGGAGTCGTGGCGGAGTTGGTGACAAAGATTACATTTTTGCATTTCACCATGTTGTGCTTCCTATAGCTTCGGAGTTTGCTCCTGATTTCGTCATCATATCAGCCGGCTTTGATGCTGCAAGGGGTGATCCTTTAGGATGCTGTGATGTTACTCCAGATGGCTATGCTCAGATGACCCACATGCTGAATGCTGTCTCTGGTGGAAAGTTACTCGTTATTCTCGAAGGCGGCTACAATCTTCGTTCAATATCATCTTCAGCTACTGCAGTAATCAAGGTATTGCTGGGTGAAAGTCCTGATTATGATCTGGCTAACTCCTTACCTTCCAAATCTGGCCTGCAAACTGTGTTTGAGGTTCTCAAAATTCAAATGGATTTCTGGCCCATAGTGGAACCCACTCTTACAAAATTACAGTCAGAGTGGGGAATGTACATGATTGAATGCAGAAAAAAACAAATTAAAAGGAGGCGGCGTTCTATCGGACCTATATTTTGGAAATGGGGAAGGAAATGCTTGTTGTATCATCTCCTGAACGGGAATCTTCGTTTAAGATCTAAAGGATGTTGA 1929 43.91 MKKLSPLNSEVAESPPSSSHLAVSTKLNSTAQNSKWTGIILAENVHVNSEHNMVLETIQMSRLANGEAEISLHKQSDQASCQGLNGRCGNSGSDRTSGRPCLDEDCEEENALGVSTRDDFGNQNTNMEPDMSRKKARKQKEITFQDMYNDQDIFDQDDDDDSDWEPLQNRGEIKKWSCTNCTMVNLDDVMHCDVCGEHRESGILKHGHFASPLLEDTGVTEGESEIKGKKNGFNSQVSASNSSTAIGFDERMLLHSEVAMKSHLHPERPDRLRAIAASLAAAGIFPGRCYPISAREITLEELQMVHSSEHVENVELTSHMLSSYFTPDTYANEHSARAARLAAGLSADLASEIVSGRAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAAFAALAAGAKKDVHHGNGTQEIFEQNKSVLYISLHRHEGGRFYPGTGAADEVGSMGAEGYCVNVPWSRGGVGDKDYIFAFHHVVLPIASEFAPDFVIISAGFDAARGDPLGCCDVTPDGYAQMTHMLNAVSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPDYDLANSLPSKSGLQTVFEVLKIQMDFWPIVEPTLTKLQSEWGMYMIECRKKQIKRRRRSIGPIFWKWGRKCLLYHLLNGNLRLRSKGC 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2234645 2243209 + Conep13aG0031400.1 Cone13ag0296 450683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0296 642 MobiDBLite consensus disorder prediction 1 26 - -
Cone13ag0296 642 CDD HDAC_classII 265 549 - -
Cone13ag0296 642 ProSiteProfiles Zinc finger RanBP2 type profile. 169 201 IPR001876 -
Cone13ag0296 642 ProSitePatterns Zinc finger RanBP2-type signature. 176 195 IPR001876 -
Cone13ag0296 642 Gene3D - 171 223 - -
Cone13ag0296 642 MobiDBLite consensus disorder prediction 10 26 - -
Cone13ag0296 642 SUPERFAMILY Arginase/deacetylase 241 583 IPR023696 -
Cone13ag0296 642 PRINTS Histone deacetylase superfamily signature 482 492 IPR000286 -
Cone13ag0296 642 PRINTS Histone deacetylase superfamily signature 367 390 IPR000286 -
Cone13ag0296 642 Pfam Histone deacetylase domain 265 548 IPR023801 -
Cone13ag0296 642 PANTHER HISTONE DEACETYLASE HDAC1-RELATED 248 573 IPR050284 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0004407(PANTHER)|GO:0005737(PANTHER)|GO:0008134(PANTHER)|GO:0016575(PANTHER)
Cone13ag0296 642 FunFam Histone deacetylase 15 237 606 - -
Cone13ag0296 642 SUPERFAMILY Ran binding protein zinc finger-like 174 199 IPR036443 -
Cone13ag0296 642 MobiDBLite consensus disorder prediction 115 136 - -
Cone13ag0296 642 Gene3D Histone deacetylase domain 236 607 IPR037138 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0296 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0296 Cone-Chr13:2234645 Cone16ag0204 Cone-Chr16:1367351 3.42E-53 dispersed
Cone13ag0296 Cone-Chr13:2234645 Cone9ag1232 Cone-Chr9:8995736 6.87E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005291 1 4 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 4 2 1 40