Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0297 ATGTCGACAAAAACTCTTTGGAGCAAAGAGGAAGACAAAGCTTTTGAAAACGCAATAGCCAAGTACTGGGTAGAGGACGATATAGAAAACAGCAAAGACGAGCAATGGGAGAAGATTTCTTCACAGGTTCCAAACAAGGACATGGAGGAGTTAAAGCTACACTATCAAATGCTTGTAGATGATGTACTTGCTATCGAAGAGGGAAATATTCCACTTCCTAATTATGTTGTAGAGGAAGCAAGTTCTTCAAACAAAGATCATAATAATACTAATAATCATGGTTTTCATGGACTCACTGGTACGCATAAAAGATCTACTTCTGGTTTAGGAAGCGGGTTCTCTTCTGGGTTGGCTAATGACTCATCTGGTCATGGCAGTAAAGGCGGATCAAAATCAGAACAAGAGAGGAAGAAAGGCATCCCCTGGACAGAAGAAGAGCACAGGTTATTTCTATTGGGTTTGGACAAATTTGGGAAGGGGGATTGGAGAAGTATTTCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGACTAAACTCGATGAACAGAGATAGAAGGAGATCAAGCATACATGATATAACCAGTCTCAACAATGGAGATATCGCATCTAGTAGTAGTAATAGTAATAACAGTATCAGAGCACCACCCATTACTGGCCAGCAAACAAACAGTAACAACTTATCAAATGGAGGAGCAATAGGAGGAGGGGTACCTGGAAAACAGATAGCTCATCCCCATCATCATCATATGGGTGGTTTAGGGGTTTATGGGACACCAGTTCATCATCATCCTCATCATCATCATGTGGGTCCTTCAGCTGTGGGTACCCCTGTTTTGCTTTCTCCTCCTGGACCCCACCACCATCCTCCTTATGTTGTTCCGATTGCTTATCCATTAGCACCTCCAACAATGCACCAATAA 954 42.14 MSTKTLWSKEEDKAFENAIAKYWVEDDIENSKDEQWEKISSQVPNKDMEELKLHYQMLVDDVLAIEEGNIPLPNYVVEEASSSNKDHNNTNNHGFHGLTGTHKRSTSGLGSGFSSGLANDSSGHGSKGGSKSEQERKKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSLNNGDIASSSSNSNNSIRAPPITGQQTNSNNLSNGGAIGGGVPGKQIAHPHHHHMGGLGVYGTPVHHHPHHHHVGPSAVGTPVLLSPPGPHHHPPYVVPIAYPLAPPTMHQ 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2243550 2244644 - Conep13aG0031500.1 Cone13ag0297 450684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0297 317 FunFam Transcription factor SRM1 1 72 - -
Cone13ag0297 317 MobiDBLite consensus disorder prediction 81 128 - -
Cone13ag0297 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 188 IPR006447 GO:0003677(InterPro)
Cone13ag0297 317 CDD SANT 7 59 IPR001005 -
Cone13ag0297 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 239 - -
Cone13ag0297 317 Gene3D - 1 72 - -
Cone13ag0297 317 MobiDBLite consensus disorder prediction 81 141 - -
Cone13ag0297 317 MobiDBLite consensus disorder prediction 201 284 - -
Cone13ag0297 317 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Cone13ag0297 317 ProSiteProfiles Myb-like domain profile. 1 59 IPR001005 -
Cone13ag0297 317 SUPERFAMILY Homeodomain-like 135 191 IPR009057 -
Cone13ag0297 317 MobiDBLite consensus disorder prediction 203 242 - -
Cone13ag0297 317 SUPERFAMILY Homeodomain-like 5 67 IPR009057 -
Cone13ag0297 317 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Cone13ag0297 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Cone13ag0297 317 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Cone13ag0297 317 Pfam Myb-like DNA-binding domain 6 58 IPR001005 -
Cone13ag0297 317 CDD SANT 141 186 IPR001005 -
Cone13ag0297 317 SMART sant 3 61 IPR001005 -
Cone13ag0297 317 SMART sant 138 188 IPR001005 -
Cone13ag0297 317 FunFam transcription factor MYB1R1 140 191 - -
Cone13ag0297 317 Gene3D - 140 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0297 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0297 Cone-Chr13:2243550 Cone19ag0270 Cone-Chr19:1881452 1.34E-159 dispersed
Cone13ag0297 Cone-Chr13:2243550 Cone19ag0268 Cone-Chr19:1851126 1.34E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44588 PF02002 TFIIE_alpha 2.80E-06 CL0123 Cone TF