Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0303 ATGGCAGAATTCATAGCAGATTTTCAAACCGTCATCAAACAACCTTCTATTTCTTTCACGGACATTGATTCCAATATGGAGCTAATGTCCCAATTTTCAGGCCTAAACCCATCTACTACTACTACTGCTACTTCTGATCTCCTAATTGACAACAACCATATAAACCCAAATTTCAATTTCCAGAATTTCATGCTCTTCTCTGATGACATTTTCTTCAACCACCAATTAAGTACACCTCAACTCCCAGAAAATTTCCAAGAAAATTATCAGCTTGTTCATCATTACGGCAGTGAGAATTCCATTGTTTCCGAGCCTAAAACGATTTTCCAAGAAGACAATAAGAGAAAAGCATTAATGGAGTTATCGGAAAGCAGCTCTGGAAATTCAAGTACCCTTCAAGTTTCTGAAACTGGAATCAAGAGAAAAAATAACTCAGGAAGAGGGAAAAGATCAAAGAGCAAGGAGAAGGGAGAGGAGGAGAAGCCAAGAGAAGTGGTTCATGTTAGAGCTAGAAGGGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGGGGAAAAATCAATGAAAGACTAAGATGTTTGCAAGACATTGTCCCAGGATGCTATAAGACCATGGGAATGGCAGTTATGTTGGACGAAATAATCAATTATATCCAGTCTTTACAAACCCAAGTCGAGTTCCTTTCCATGAAGCTTACCGCAGCAAGCACTTTTTATGACTTCAATTCAGAGACAGATGCTATAGAAAAATTGCAGAGGGCAAAAGCACATGAAGCAAGAGAATTGGAGAGATTGATAAGAGAAGGATATGGAGGAGGAATTGGAGCTTGTTTCCACTCAACTTGTCCCCTTTGA 864 39.24 MAEFIADFQTVIKQPSISFTDIDSNMELMSQFSGLNPSTTTTATSDLLIDNNHINPNFNFQNFMLFSDDIFFNHQLSTPQLPENFQENYQLVHHYGSENSIVSEPKTIFQEDNKRKALMELSESSSGNSSTLQVSETGIKRKNNSGRGKRSKSKEKGEEEKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYIQSLQTQVEFLSMKLTAASTFYDFNSETDAIEKLQRAKAHEARELERLIREGYGGGIGACFHSTCPL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2373843 2375652 - Conep13aG0032100.1 Cone13ag0303 450690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0303 287 Coils Coil 251 271 - -
Cone13ag0303 287 Gene3D - 171 242 IPR036638 GO:0046983(InterPro)
Cone13ag0303 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983(InterPro)
Cone13ag0303 287 FunFam transcription factor BEE 3-like 171 242 - -
Cone13ag0303 287 CDD bHLH_AtBPE_like 164 249 - -
Cone13ag0303 287 MobiDBLite consensus disorder prediction 150 180 - -
Cone13ag0303 287 MobiDBLite consensus disorder prediction 120 141 - -
Cone13ag0303 287 SMART finulus 180 230 IPR011598 GO:0046983(InterPro)
Cone13ag0303 287 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 111 252 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone13ag0303 287 MobiDBLite consensus disorder prediction 120 180 - -
Cone13ag0303 287 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983(InterPro)
Cone13ag0303 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 241 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0303 Cone-Chr13:2373843 Cone18ag0913 Cone-Chr18:6505353 2.68E-33 dispersed
Cone13ag0303 Cone-Chr13:2373843 Cone6ag0437 Cone-Chr6:2134965 1.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44590 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0303 - - - 0.0