Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0305 ATGAAGTCTTCTACGGAGGGAATTAACATCGCTGCTTGTGCTCAGAGTCTCGACGTTGATAATCGGATTTCCCTCCGTTATTACTATCGGATCGCCGACAGTATTCGCCGTCAGGCAGACATCTTTCGAGCAGAGAAGAATATTATTGATCTATATGTCATGCTACTGAGGTTCTCAAGTTTGGTCACTGAGACGATACCACGCCATAGAGAGTATGGAGCATATGTTAAATGCCAACAGGTTTATTTCAAGAAGAAACTATTGATTGCCTTAAATGAGCTCGAACAGTTGAAGCCAGCAGTGCAACAGAAGGTCAATGAATCAAGCAGAAATCAAGTATATCAAGCAAATGGGCTGGGTGATTACAGTCAAAATGAGTCATCGGAGTGGCCTCTTCATGATCTATCTTCATATGCTGTGTCTGTTGGGAGGCTAGACCAGCTATTCAAGAATCGATGTATCAAAGTCAGAGAGCTTTCATCTGGCCGTGCTGTGGAAGAACAACTCCGAAAACTGCTGCAGCAGTCCAAAGAAAATGAGTCTCAAACTGAAAGAGATCGCTATGACTCAGAACAAGAAAGATCAAGGCTAGGGTCAATCCTAAGCCAGAATGATGAAGTACAAGACTTGATTCCTGCATTGTCACCCCCAGTTACTGAGACAGAATGTGCTCAGGTGTCCCCATCAGCAGATGGTTTTATTCGTGCTGAAGCTCGCTTGCAGTTGCACCTCTCAACCGCAATGATGGAGGGCTTTATGAGGCTGGCCAAGTCAAATACTGATAAGAACTTAGAAACTTGTGGTGTACTTGCAGGTTCACTTAAAAACAGAAATTTTTTTGTGACAACACTAATCATTCCCAAGCAGGAATCAACAACAGATACTTGTCATACAATAAATGAGGAAGAAATATTTGAAGTACAGGCTAAGCAATCCCTTTTCACTCTTGGGTGGATCCATACACATCCTACGCAGTCTTGTTTTATGTCATCAGTTGATGTTCATACTCATTACTCTTATCAGATTATGCTGCCCGAGGCAGTTGCGATTGTAATGGCGCCTAGAGATGGCTCAAGAAAACACGGCATTTTCCGGTTAACATACCCGGCAAAGTGGGTTTCATCCGCACAGTCAGCCTCCGGATGGTGGGCCCATTTTCAAAACCTGCACGGATGTTCACGTGGACCCCAATCTCAAATTTGA 1203 43.72 MKSSTEGINIAACAQSLDVDNRISLRYYYRIADSIRRQADIFRAEKNIIDLYVMLLRFSSLVTETIPRHREYGAYVKCQQVYFKKKLLIALNELEQLKPAVQQKVNESSRNQVYQANGLGDYSQNESSEWPLHDLSSYAVSVGRLDQLFKNRCIKVRELSSGRAVEEQLRKLLQQSKENESQTERDRYDSEQERSRLGSILSQNDEVQDLIPALSPPVTETECAQVSPSADGFIRAEARLQLHLSTAMMEGFMRLAKSNTDKNLETCGVLAGSLKNRNFFVTTLIIPKQESTTDTCHTINEEEIFEVQAKQSLFTLGWIHTHPTQSCFMSSVDVHTHYSYQIMLPEAVAIVMAPRDGSRKHGIFRLTYPAKWVSSAQSASGWWAHFQNLHGCSRGPQSQI 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2383148 2387545 + Conep13aG0032300.1 Cone13ag0305 450692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0305 400 MobiDBLite consensus disorder prediction 174 194 - -
Cone13ag0305 400 PANTHER AMSH-LIKE PROTEASE 3 370 - GO:0005768(PANTHER)|GO:0016020(PANTHER)|GO:0070536(PANTHER)|GO:0071108(PANTHER)
Cone13ag0305 400 Coils Coil 91 111 - -
Cone13ag0305 400 Gene3D Cytidine Deaminase, domain 2 232 389 - -
Cone13ag0305 400 MobiDBLite consensus disorder prediction 174 201 - -
Cone13ag0305 400 Coils Coil 166 186 - -
Cone13ag0305 400 ProSiteProfiles MPN domain profile. 242 370 IPR037518 -
Cone13ag0305 400 CDD MPN_AMSH_like 241 369 IPR044098 GO:0016579(InterPro)|GO:0061578(InterPro)|GO:0070536(InterPro)|GO:0140492(InterPro)
Cone13ag0305 400 Gene3D - 2 127 - -
Cone13ag0305 400 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 241 346 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone13ag0305 400 SUPERFAMILY JAB1/MPN domain 241 369 - -
Cone13ag0305 400 SMART pad1_6 241 369 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone13ag0305 400 Pfam USP8 dimerisation domain 10 104 IPR015063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0305 K11866 - - gmx:100777366 402.519
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0305 Cone-Chr13:2383148 Cone4ag0116 Cone-Chr4:549411 1.05E-78 dispersed
Cone13ag0305 Cone-Chr13:2383148 Cone19ag0341 Cone-Chr19:2779540 2.65E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021393 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2