Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0306 ATGGCGACGCCGTTGGCCGGTATGCAACACAGGGACGGAGGTGGAGGAGTTGCGGTGCTGTCGAATTCTGTGAATAAGGTGGATTCATCGTCGTCTTCGAATGGCTGTTTGTGGAGCTCGGAGCCTAAGTCTCCGATTCTGATTTTCTTATTCTTTCACAAAGCGATTCGCTACGAGCTCGATGCGCTTCATAGGCTGGCCATGGCGTTCGCCACTGGTCAGCGAACGGATATCCAGCCGCTTTTGGACCGCTACCATTTTCTGAGATCGATTTATAAACACCACTCCAATGCTGAAGACGAGGTAATTTTTGCAGCACTTGATATACGTGTGAAGAATGTGGCAAAAACATACTCTCTTGAACATAAGGGTGAAAGCAATCTCTTTGATCATCTTTTCGAGCTTCTCAAATCTGATACACAAAGTAATGAAAGCTTCCCAAGGGAGTTAGCATCCTGTACAGAAGCCCTACAGACATCAATTAGCCAGCACATGGCTAAGGAGGAAGAACAGGTCTTTCCCTTGCTTATTGAAAAGTTCTCTCTTGAAGAGCAGGCATCCCTGGTTTGGCAGTTCTTGTGCAGTATTCCCGTGAATATGTTGGCTGAATTTCTTCCCTGGCTTTCATCATCAATTTCATCTGATGAATATCAGGATCTGCGAAAATGTATAAGCAAGATAGTTCCTAAAGAAAAACTTCTTCAAAAGGTCATATTCACATGGATGGAACAAAGAGGCAGAACTGAAAGTTGTGTAGATGACAATCAGTTCCGAAGTCTTGCAGATTCTACGGCTAGCACATCAGACCACCACACAGAAAAAGGACATTGTCCATGTGAATTGACTGGTACTGGAAAAAGGAAATATCCAGATTCAAGTACTGATATATCGGATACCATGGAGACACATCCAATTAATGAAATATTGCTATGGCATAAGGCTATCAAAAGAGAATTAAATGAGATAGCAGAGGAGGCTAGGAAGATACAGCGTCGTGGAAATTTTAGTAATCTATCAGCTTTTAACGATAGGTTACAATTCATCGCTGAAGTCTGTATCTTTCACAGTATTGCTGAGGACAAAATAATCTTTCCTGCAGTAGATGGGGAATTCTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAGTTCAATGAGTTTAGATGCTTGATTGAAAGAATTCAGAGTGAAGGAGCAGTGTCTTCTTCTGCTGCAGAGTTTTACGTGAAGCTGTGCACACATGCTGATCAAATAATGGATACCACACAGAGGCACTTCTACAATGAGGAGATTCAGGTTCTCCCACTTGCCCAAAGGCATTTTAGCTTCAAAAGACAGCGAGAACTTCTGTATCGAAGCTTGTGCACGATGCCACTGAAATTGATTGAGTGTGTCTTGCCCTGGCTAGTAGAATCATTGAGTGATGATGAAGCCAGAAATTTTCTAAAAAACATGCAATTGGCAGCCCCAGCATCAGATAGTGCTCTGGTGACACTGTTTTCTGGTTGGGCTTGCAAGGCTCGTAAAAAAGGTTTATGCTTGTCTGCGAAGGCCAGTGGTTGTTGTCCTGTTAAAAGGTTCACTGATATTGAAGAAGATTCTGTTCGATCGATCTGTTCATCTGATTCTGCATTGTATGAAAGAGACCCTTCAACCTCAGGCCAGACAAATAATGTTGAAAGGCCGCCAGTGAAACGAAATGTCTCAGTGTCATGTAAAAGCTGTGATGTCCCTAAAAATTTAGAGACCACCAATGTCCAGCAACAGTGTTGTAATGATCAATCCTGCCGTGTCCCAGGTTTGGGAGTTAACACCAATAATCTGGGGTTGAGTTCTCTCTTTGCAACCAAATCATTGCGCTCTGTACCTCCCAGCTCCTGTGTGCCGTCACTTAATTCTTGTCTTTTTTCATGGGAAACAGATTACAGCTTATCTGATGCTGGGTCTGCCGGACGACCAATTGACACTATTTTTAAATTCCACAAAGCCATACGCAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAGCTTAGTGAATGTGATGGGACATCCCTTCGGCAATTTATTGGAAGATTTCGCCTGCTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATCGTGTTTCCTGCATTGGAATCGAAAGAGACGCTGCACAATGTTAGTCACTCGTATACATTGGACCATAAGCAGGAGGAAAAATTATTTGAAGATATTTCGCGTGTTCTCTCTGAACTGGCAATTCTCCATGAAAATTTGCAAGAGTCTACTATGGAGGGTAGTGAATTTACTGGGAAGTATAATGAACTGGCTACAAAGCTGCAGGGAATGTGCAAATCTATAAGAGTCACCTTAGATCAGCATATTTTTAGGGAAGAACTCGAATTATGGCCATTGTTTGGTAGACACTTCTCAGTGGAGGAACAAGATAAGATAGTGGGCCGCATAATTGGAACAACAGGTGCAGAAGTTCTCCAATCAATGTTACCATGGGTTACTTCGGCTCTTACACAGGATGAACAGAATAAATTGATGGATACATGGAAGCAGGCCACTAAAAACACTATGTTCAATGAATGGCTCAATGAATGCTGGAAAGGAACTGCGGCATCTACTGTACAGACTGAAACATTAGAAGTTACTGATACTGAGTTTCAAGAAAGCTTGGAACAGAATGACCAGATGTTCAAGCCTGGCTGGAAGGATATTTTTCGTATGAATCAAAATGAGCTTGAATCAGAGATCAGAAAAGTTTATAGGGATTTGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCTCAGCAGAAGTTACCTCAAGAAGAAGTAGGGGAGACTTCTAACAGTGAGGATATAGTGGGTCACTTGCCATCATTCCGTGACCCTGAAAAAGAAGTGTTCGGATGCGAGCATTACAAAAGAAACTGCAAACTTCGTGCTGCTTGCTGTGGAAAGTTATTTGCATGTCGGTTTTGCCATGATAATGTCAGTGATCACTCGATGGACAGGAAAGCAACATCAGAAATGATGTGTATGAACTGCCTAACTGTTCAGGCAGTTGGGCCTATATGCATGACACCTTCATGCAATGGACTATCAATGGCGAAGTACTTTTGCAGTATTTGCAAATTTTTTGACGATGAAAGGAACGTATATCATTGTCCCTTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGCATTGATTACTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGCTTGTGAATCACAAGTGCCTGGAGAAAAGCTTGGAAACAAACTGCCCTATCTGCTGCGACTTCCTCTTTACCTCCAGTGCAACAGTCAGAGCTCTACCTTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCCTACACGTGTAGCCACTATACCTGTCCAATATGTAGCAAATCTTTAGGGGATATGGCGGTTTATTTTGGCATGCTTGATGCCCTCTTGGCTGCGGAGGAGCTACCCGAAGAGTACAGGGATCGTTGCCAGGATATACTTTGCAATGACTGTGACTGGAAAGGATCGTCAATATTCCACTGGCTATATCACAAGTGTGGGTCCTGCGGCTCATACAACACCCGTGTGATCAAGAATGAGACCACAATTGTGGACTGTTCAGCATCAAACCAATGA 3696 42.88 MATPLAGMQHRDGGGGVAVLSNSVNKVDSSSSSNGCLWSSEPKSPILIFLFFHKAIRYELDALHRLAMAFATGQRTDIQPLLDRYHFLRSIYKHHSNAEDEVIFAALDIRVKNVAKTYSLEHKGESNLFDHLFELLKSDTQSNESFPRELASCTEALQTSISQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMLAEFLPWLSSSISSDEYQDLRKCISKIVPKEKLLQKVIFTWMEQRGRTESCVDDNQFRSLADSTASTSDHHTEKGHCPCELTGTGKRKYPDSSTDISDTMETHPINEILLWHKAIKRELNEIAEEARKIQRRGNFSNLSAFNDRLQFIAEVCIFHSIAEDKIIFPAVDGEFSFLQEHAEEESQFNEFRCLIERIQSEGAVSSSAAEFYVKLCTHADQIMDTTQRHFYNEEIQVLPLAQRHFSFKRQRELLYRSLCTMPLKLIECVLPWLVESLSDDEARNFLKNMQLAAPASDSALVTLFSGWACKARKKGLCLSAKASGCCPVKRFTDIEEDSVRSICSSDSALYERDPSTSGQTNNVERPPVKRNVSVSCKSCDVPKNLETTNVQQQCCNDQSCRVPGLGVNTNNLGLSSLFATKSLRSVPPSSCVPSLNSCLFSWETDYSLSDAGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSECDGTSLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISRVLSELAILHENLQESTMEGSEFTGKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKLMDTWKQATKNTMFNEWLNECWKGTAASTVQTETLEVTDTEFQESLEQNDQMFKPGWKDIFRMNQNELESEIRKVYRDLTLDPRRKAYLVQNLMTSRWIAAQQKLPQEEVGETSNSEDIVGHLPSFRDPEKEVFGCEHYKRNCKLRAACCGKLFACRFCHDNVSDHSMDRKATSEMMCMNCLTVQAVGPICMTPSCNGLSMAKYFCSICKFFDDERNVYHCPFCNLCRVGKGLGIDYFHCMTCNCCLGIKLVNHKCLEKSLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCDWKGSSIFHWLYHKCGSCGSYNTRVIKNETTIVDCSASNQ 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2395636 2404077 - Conep13aG0032400.1 Cone13ag0306 450693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0306 1231 FunFam Zinc finger protein BRUTUS 648 866 - -
Cone13ag0306 1231 CDD Hr-like 307 435 - -
Cone13ag0306 1231 Coils Coil 312 332 - -
Cone13ag0306 1231 ProSiteProfiles Zinc finger RING-type profile. 1111 1153 IPR001841 -
Cone13ag0306 1231 SUPERFAMILY Zinc hairpin stack 1048 1104 IPR037275 -
Cone13ag0306 1231 ProSiteProfiles Zinc finger CHY-type profile. 975 1044 IPR008913 GO:0008270(InterPro)
Cone13ag0306 1231 Pfam CHY zinc finger 982 1050 IPR008913 GO:0008270(InterPro)
Cone13ag0306 1231 CDD Hr-like 48 174 - -
Cone13ag0306 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1104 1155 IPR013083 -
Cone13ag0306 1231 CDD RING-H2_Pirh2-like 1110 1153 - -
Cone13ag0306 1231 Gene3D nmb1532 protein domain like 648 867 - -
Cone13ag0306 1231 Pfam Zinc-ribbon 1158 1215 IPR039512 -
Cone13ag0306 1231 ProSiteProfiles Zinc finger CTCHY-type profile. 1047 1110 IPR017921 -
Cone13ag0306 1231 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1217 - -
Cone13ag0306 1231 CDD Hr-like 655 801 - -
Cone13ag0306 1231 SUPERFAMILY CHY zinc finger-like 975 1038 IPR037274 GO:0008270(InterPro)
Cone13ag0306 1231 FunFam Zinc finger protein-related isoform 1 1106 1155 - -
Cone13ag0306 1231 Gene3D - 1182 1226 - -
Cone13ag0306 1231 Pfam Hemerythrin HHE cation binding domain 304 437 IPR012312 -
Cone13ag0306 1231 Pfam Hemerythrin HHE cation binding domain 653 802 IPR012312 -
Cone13ag0306 1231 Pfam Hemerythrin HHE cation binding domain 49 176 IPR012312 -
Cone13ag0306 1231 SUPERFAMILY RING/U-box 1110 1156 - -
Cone13ag0306 1231 Gene3D nmb1532 protein domain like 44 194 - -
Cone13ag0306 1231 Gene3D nmb1532 protein domain like 308 453 - -
Cone13ag0306 1231 SMART ring_2 1111 1152 IPR001841 -
Cone13ag0306 1231 Pfam Ring finger domain 1110 1152 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0306 Cone-Chr13:2395636 Cone19ag0099 Cone-Chr19:559631 3.74E-258 dispersed
Cone13ag0306 Cone-Chr13:2395636 Cone19ag0343 Cone-Chr19:2797263 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0306 K16276 - csv:101215023 2016.89