Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0313 ATGAAAATTTCTCTGCTAAAAAGCTTCTCTCTCCAAGCTCGAAATCTTCTTCTTACTCCCGCCACATATAAGCCAAACACTAATCTACCATGTGAACTATTGGCCGCGTCAAATCGACCTCATCGACTCAGGTTCTTCTCCTCCGATAACCATTCTCTGCCCTCCAGTGAAATCCCTATCCCTGCTACTGAGTCGAACTCGAATTCCACCGAGAAGAAAGACATAACTGTCGATGTGCAGAACGTCAATAATAAAGAGCTGAAAACACGGATAGAGAAGTATTTTAAAGGTGATGAAGAGGCACTCCCATCAATTCTCGAAGCGATTCTGCAGAGGAAATTGGTTGGAAAGCATGAGGAGACAGATGATGAGTTGATGGACGAATTGAGAATGCAGCCACTGGATAATGTTCCAGACAAAGAGTTTGAGTCGGATTTTGAAGAAGCTCATGAGACAGATGAGGAGATTGACGATTTGTATAGTACAAGGGATATAGTTGTGCAGAGAATGGCGAAGGATGAATATTTTAACATGGATGACAGGAAATGGGATGAGCTTGTTGAGGATGGAGTGAAGCATGGGTTCTTAAAGGACACAAAGGAGTGCGAGGAGATTCTAGAGGATATGCTTAGTTGGGAAAAGCTCCTCCCAGTTGAGATGAAGAAAGAGGTGGAAGAGAAGTTTAATGAGTTAGGAGATATGTGTGAACGAGGAGAGCTTGAACCTGAAGAAGCTTACAAGTTATTTAAAGAGTTTGAGGATCAGATGGTCATGGAATATGGGAAGATGATGGAAGCGGAGGGTCCGCCTCATTTTGATGACTCCGTGCCAGACAACAAAAAAGATTTAGACGACCCACCAGGCGAGGGGCCCATACTTAGATGGCATACTCGGGTAGTTTTTGCTCCTGGTGGTGATGCATGGCACCCGAAAAACCGAAAAGTGAAATTGTCTGTTACTGTGAAAGAACTTGGATTATCAAAGTATCAATTCCGCCGCTTAAGGGAACTGGTTGGAAAAAGGTACCATCCAGGGAAAGACGAGCTTACAATCACCAGCGAGAGATTTGAACACAGAGAAGAAAACAGAAAGGATTGCCTTAGGACACTTCTTTCCCTTATGGAGGAGGCTGGAAAAGCTAACAAGCTAGTAGATGAAGCTCGTGCTCAATACGTGAAGGAGAGGCTCAGAGCAAATCCCCAGTTTATGGAGAGGTTGAGAACCAAGACGATGAGATTGCAGGTATCAAATGCTGTTTAG 1260 43.97 MKISLLKSFSLQARNLLLTPATYKPNTNLPCELLAASNRPHRLRFFSSDNHSLPSSEIPIPATESNSNSTEKKDITVDVQNVNNKELKTRIEKYFKGDEEALPSILEAILQRKLVGKHEETDDELMDELRMQPLDNVPDKEFESDFEEAHETDEEIDDLYSTRDIVVQRMAKDEYFNMDDRKWDELVEDGVKHGFLKDTKECEEILEDMLSWEKLLPVEMKKEVEEKFNELGDMCERGELEPEEAYKLFKEFEDQMVMEYGKMMEAEGPPHFDDSVPDNKKDLDDPPGEGPILRWHTRVVFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLLSLMEEAGKANKLVDEARAQYVKERLRANPQFMERLRTKTMRLQVSNAV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2505423 2509753 - Conep13aG0033200.1 Cone13ag0313 450700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0313 419 FunFam Ribosomal protein S24/S35 297 416 - -
Cone13ag0313 419 Pfam Mitochondrial ribosomal subunit protein 309 382 IPR019349 -
Cone13ag0313 419 MobiDBLite consensus disorder prediction 48 72 - -
Cone13ag0313 419 Coils Coil 370 390 - -
Cone13ag0313 419 MobiDBLite consensus disorder prediction 267 289 - -
Cone13ag0313 419 MobiDBLite consensus disorder prediction 46 72 - -
Cone13ag0313 419 Gene3D - 294 417 - -
Cone13ag0313 419 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 41 408 IPR039848 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005763(PANTHER)|GO:0032543(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0313 K17413 - - mdm:103438026 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0313 Cone-Chr13:2505423 Cone2ag0741 Cone-Chr2:33162938 1.84E-20 dispersed
Cone13ag0313 Cone-Chr13:2505423 Cone19ag0353 Cone-Chr19:2898559 1.63E-265 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g282 . . . Bda15g00498 Bpe12g00708 . . . . . Cma10g00309 Cma11g00290 Car10g00294 Car11g00265 . . Cpe04g01390 . . . . . . . Cla06g01448 Cam06g1601 Cec06g1663 Cco06g1657 Clacu06g1566 Cmu06g1519 Cre06g2330 Cone2ag0741 . Cone13ag0313 . . . . . Blo13g00185 . . . . . . Bma08g00003 . Cmo10g00332 Cmo11g00295 . . . . . . . . . . . . . . . . . . . . Lsi06g01314 Csa01g00402 Chy02g02347 Cme02g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006242 1 0 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37