Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag0314 ATGGCGGAGCACATGAATCAGAGAAGACCTAGAGCCCAATTCAACCCTGTTCCCATTTCCGAGTCAGATCCAAACCCACTTCCCCAAATCCCTTCCATAATCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCCTCTCTACATTTTCCAACACCACTTCTAATGAAACCCTACCAACCTCCATTAACAGCAAAAAGAAGAATAATTTCCCCTCTGCAACTTTACGAGGGCTTGGCTGCACCGCCTCGGCTTCTCAGCAAGTTTCTGTTCCGGCTGTGATTAGGTCATCGGCTGATTGGGAAGGAGGGAATAAGAAGTCGAGGAAGAAGAAGCAGAATATGAAGAAGAAGTCTAAGAACAAAACCCATCAAGGGATTTCTGTTGAGGGTTCTAATTTCAATAATTCGAATTCTGGGTTTAATTCTGTGAGCTGTGTTAATGTTGATGTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTCTCTGCTTCTGATGCTGCTGTGGATTCTGTGGATTGTGTTGTTGCTAGAAGGAATTTTTCTGCAAGGGGCAAGATTGATGGGGAGAGGATTAGTCATAGAGAGCGTTCGTGCTTGTCAAGGAGAACTGTGAACTCAGACAATTTATCGTTATTTGATTCTGATCCGTTAGAGGTTTTCGGAAGTAGGTATCATCGTCATGCCAGACATCCTTCTCCAGATGGATTTGCTGAGTTAATGTTGTTCCATAGCAATTTGCTGATCGGTGGGAGAATGGACGGACAGGATCTGTTTAGGGAGATGAGACTTGATGTTGATAACATGTCCTATGAGCAACTGCTCGAGCTTGGTGAAAGAATTGGTTATGTTAATACTGGATTGAAGGAAGATGAAATAAGCCGAAGTGTCCGTAAAACCAAGTCCTCAACTTCTAAAGATCTACCTTCTCTTTCAACTCGAGTAGATAGAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGATGATGATGAAATGGGAAAGCTGGATTGTGGACATAGCTTTCACCTACAGTGTATAAAGCAGTGGCTTTACCATAAAAATGCTTGCCCGGTTTGTAAAACTGCAGTTTCAGTTCGGGTCTGA 1107 43.36 MAEHMNQRRPRAQFNPVPISESDPNPLPQIPSIIQSTRCKSTISSLLLSTFSNTTSNETLPTSINSKKKNNFPSATLRGLGCTASASQQVSVPAVIRSSADWEGGNKKSRKKKQNMKKKSKNKTHQGISVEGSNFNNSNSGFNSVSCVNVDVQDVWCGPGIGFSASDAAVDSVDCVVARRNFSARGKIDGERISHRERSCLSRRTVNSDNLSLFDSDPLEVFGSRYHRHARHPSPDGFAELMLFHSNLLIGGRMDGQDLFREMRLDVDNMSYEQLLELGERIGYVNTGLKEDEISRSVRKTKSSTSKDLPSLSTRVDRKCSICQEEYEDDDEMGKLDCGHSFHLQCIKQWLYHKNACPVCKTAVSVRV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2519642 2523146 + Conep13aG0033300.1 Cone13ag0314 450701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag0314 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 367 IPR013083 -
Cone13ag0314 368 SUPERFAMILY RING/U-box 311 366 - -
Cone13ag0314 368 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Cone13ag0314 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 364 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone13ag0314 368 Pfam Ring finger domain 319 361 IPR001841 -
Cone13ag0314 368 MobiDBLite consensus disorder prediction 1 25 - -
Cone13ag0314 368 SMART ring_2 320 360 IPR001841 -
Cone13ag0314 368 FunFam E3 ubiquitin-protein ligase rnf12-A 285 366 - -
Cone13ag0314 368 MobiDBLite consensus disorder prediction 101 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag0314 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0314 Cone-Chr13:2519642 Cone4ag1588 Cone-Chr4:12129337 5.15E-30 dispersed
Cone13ag0314 Cone-Chr13:2519642 Cone19ag0355 Cone-Chr19:2918922 9.41E-239 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g278 . . . . Bpe12g00707 Bpe13g00364 Bma06g00053 . Cmo13g01045 Cmo18g00042 . . . . . Cpe20g00137 . . . . . . . . . . . . . . . . . Cone13ag0314 . Lsi02g00212 Csa01g00694 Chy12g01417 Cme12g01853 Blo13g00184 . Bda11g01777 . . . . Bma08g00004 . . . Cma13g01007 Cma18g00052 Car13g00842 Car18g00045 Cpe09g01128 . Bhi08g01262 . . Lac10g0265 . . . Cla04g01070 Cam04g1114 Cec01g1628 Cco01g1674 Clacu04g1140 Cmu04g1122 Cre01g1423 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004518 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42